PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004490046.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

NAC

Protein Properties

Length: 406aa MW: 46710.2 Da PI: 6.985

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004490046.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.4	1.1e-52	14	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 l pGfrFhPtdeelv +yLk+k+++++l++ e ik++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ XP_004490046.1 14 LLPGFRFHPTDEELVGFYLKRKIQQRPLSI-ELIKQLDIYKYDPWDLPKFATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSS 107 579*************************.89***********8888899***********************************9 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +glkk+Lvfykgra kg+ktdW+mhe+rl XP_004490046.1 108 eGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 141 56677*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-57	13	172	IPR003441	NAC domain
PROSITE profile	PS51005	56.92	14	172	IPR003441	NAC domain
Pfam	PF02365	1.4E-25	16	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0045770	Biological Process	positive regulation of asymmetric cell division
GO:0048103	Biological Process	somatic stem cell division
GO:0048829	Biological Process	root cap development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MEERNDGEKL DEVLLPGFRF HPTDEELVGF YLKRKIQQRP LSIELIKQLD IYKYDPWDLP 60 KFATTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGS KCIGLKKSLV 120 FYKGRAAKGV KTDWMMHEFR LPSLIDPLSP NKYIDKTIPT NESWAICRIF KKTNSTAQRA 180 SSQSWVSSLN SETRTSMLTK NQETTQFCSN NMSQTKKTTL PNNFFTNNNN NTQNFDVDVD 240 VTTPYKSIIN PLLHKAFDHL PISNNDLNTS LIFSSSPLET SNTNINFSKS TMDVSSMLLN 300 MSSSMFVGDF SKTCDEDITT NFNDGLQEHF SDYSTSFLQT TFGNNQYDNN ALVKINPYYY 360 NNVNVPRVDD QDFNIGDAWK SNLLWDTSFC PCDVPSTYYS TTKCYT

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MEERNDGEKL DEVLLPGFRF HPTDEELVGF YLKRKIQQRP LSIELIKQLD IYKYDPWDLP  60
KFATTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGS KCIGLKKSLV  120
FYKGRAAKGV KTDWMMHEFR LPSLIDPLSP NKYIDKTIPT NESWAICRIF KKTNSTAQRA  180
SSQSWVSSLN SETRTSMLTK NQETTQFCSN NMSQTKKTTL PNNFFTNNNN NTQNFDVDVD  240
VTTPYKSIIN PLLHKAFDHL PISNNDLNTS LIFSSSPLET SNTNINFSKS TMDVSSMLLN  300
MSSSMFVGDF SKTCDEDITT NFNDGLQEHF SDYSTSFLQT TFGNNQYDNN ALVKINPYYY  360
NNVNVPRVDD QDFNIGDAWK SNLLWDTSFC PCDVPSTYYS TTKCYT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-53	14	179	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-53	14	179	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-53	14	179	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-53	14	179	17	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-53	14	179	20	174	NAC domain-containing protein 19
3swm_B	1e-53	14	179	20	174	NAC domain-containing protein 19
3swm_C	1e-53	14	179	20	174	NAC domain-containing protein 19
3swm_D	1e-53	14	179	20	174	NAC domain-containing protein 19
3swp_A	1e-53	14	179	20	174	NAC domain-containing protein 19
3swp_B	1e-53	14	179	20	174	NAC domain-containing protein 19
3swp_C	1e-53	14	179	20	174	NAC domain-containing protein 19
3swp_D	1e-53	14	179	20	174	NAC domain-containing protein 19
4dul_A	1e-53	14	179	17	171	NAC domain-containing protein 19
4dul_B	1e-53	14	179	17	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004490046.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU661928	1e-146	EU661928.1 Glycine max NAC domain protein (NAC36) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004490046.1	0.0	protein FEZ
Swissprot	Q9ZVH0	1e-109	FEZ_ARATH; Protein FEZ
TrEMBL	A0A1S2XIY2	0.0	A0A1S2XIY2_CICAR; protein FEZ
STRING	XP_004490046.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2013	34	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-108	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]