PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004490093.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

NAC

Protein Properties

Length: 285aa MW: 32834.8 Da PI: 7.4905

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004490093.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.5	1.2e-53	9	134	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+v+yL+++++++++++ ++i+evdiyk++Pw+Lp k + e+ewyfFs+r++ky++g r+nrat sgyWkatg+dk+++s XP_004490093.1 9 LPPGFRFHPTDEELIVYYLCNQATSQPCPA-SIIPEVDIYKFDPWELPDKSDFVENEWYFFSPRERKYPNGVRPNRATVSGYWKATGTDKSIFS- 101 79**************************.89***********88888899**********************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++g+kk Lvfykgr pkg ktdW+mheyrl XP_004490093.1 102 GSKHIGVKKALVFYKGRPPKGLKTDWIMHEYRL 134 999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.59E-65	6	161	IPR003441	NAC domain
PROSITE profile	PS51005	60.539	9	161	IPR003441	NAC domain
Pfam	PF02365	9.9E-27	10	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MNGRTSSDLP PGFRFHPTDE ELIVYYLCNQ ATSQPCPASI IPEVDIYKFD PWELPDKSDF 60 VENEWYFFSP RERKYPNGVR PNRATVSGYW KATGTDKSIF SGSKHIGVKK ALVFYKGRPP 120 KGLKTDWIMH EYRLIGSRKQ ANRQIGSMRL DDWVLCRIYK KKNTTKSFDT REEYPTNQIN 180 VSPRNDDDSE QELMKFSRTC SLTNLLDMDY LGPISQILSD GSYNSTFEYQ INTAHGGIIV 240 DPFVKSQMVE MATNSYAADS EKNNVKQNSS FNSTLFGNQV YDHRE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-71	5	166	13	170	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-71	5	166	13	170	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-71	5	166	13	170	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-71	5	166	13	170	NO APICAL MERISTEM PROTEIN
3swm_A	4e-71	5	166	16	173	NAC domain-containing protein 19
3swm_B	4e-71	5	166	16	173	NAC domain-containing protein 19
3swm_C	4e-71	5	166	16	173	NAC domain-containing protein 19
3swm_D	4e-71	5	166	16	173	NAC domain-containing protein 19
3swp_A	4e-71	5	166	16	173	NAC domain-containing protein 19
3swp_B	4e-71	5	166	16	173	NAC domain-containing protein 19
3swp_C	4e-71	5	166	16	173	NAC domain-containing protein 19
3swp_D	4e-71	5	166	16	173	NAC domain-containing protein 19
4dul_A	4e-71	5	166	13	170	NAC domain-containing protein 19
4dul_B	4e-71	5	166	13	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269\|PubMed:29760199}.
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269\|PubMed:29760199}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004490093.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269\|PubMed:29760199}.
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269\|PubMed:29760199}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM211498	0.0	KM211498.1 Medicago sativa NAC transcription factor (NAP) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001352025.1	0.0	NAC family transcription factor 3
Swissprot	K4BNG7	1e-110	NAP2_SOLLC; NAC domain-containing protein 2
Swissprot	K4BWV2	1e-110	NAP1_SOLLC; NAC domain-containing protein 1
TrEMBL	D0PWB2	0.0	D0PWB2_CICAR; NAC family transcription factor 3
STRING	XP_004490093.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4103	32	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	1e-111	NAC-like, activated by AP3/PI

Link Out ? help Back to Top
Entrez Gene	101506808

Publications ? help Back to Top
Peng H, et al. A NAC transcription factor gene of Chickpea (Cicer arietinum), CarNAC3, is involved in drought stress response and various developmental processes. J. Plant Physiol., 2009. 166(17): p. 1934-45 [PMID:19595478] Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]