PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004490261.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

bHLH

Protein Properties

Length: 336aa MW: 37165.5 Da PI: 6.9507

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004490261.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.9	2.9e-16	47	96	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lr+l+P++ ++K + a+ L +++eY+++Lq XP_004490261.1 47 RSKHSVTEQRRRSKINERFQILRDLIPQC----DQKRDTASFLLEVIEYVQYLQ 96 899***********************9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.272	45	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-24	46	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.81E-19	46	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.20E-14	47	100	No hit	No description
Pfam	PF00010	1.1E-13	47	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.9E-12	51	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MKAGKVNHEE DEYDEEDFNS LKKQGSSSAP NTNNKDGKAT DKASVIRSKH SVTEQRRRSK 60 INERFQILRD LIPQCDQKRD TASFLLEVIE YVQYLQEKVQ KYEGSYQGWN QETSKLMPWR 120 NSHWRVQNIV GQPPAVKNGS GLVSPFPGKF DESNVSISPT MLSGTQCMIE PEQSRDIVSK 180 IAERQPDLAS KGIPLPMAMH ANMSVPVRSD GVLAHPLQGT VSDAQSTECP ATSEQLNHQD 240 ELTVEGGTIS ISSVYSQGLL NNLTQALQSA GLDLSQANIS VQIDLGKRAN KAPSGTTSSP 300 KNHDNPVCSN QAIAHFRDGI IREDSDQALK RMKTYK

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00219	DAP	Transfer from AT1G69010	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004490261.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT053019	0.0	BT053019.1 Medicago truncatula clone MTYFL_FM_FN_FO1G-B-11 unknown mRNA.
GenBank	BT133588	0.0	BT133588.1 Medicago truncatula clone JCVI-FLMt-12L3 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004490261.1	0.0	transcription factor BIM2
Swissprot	Q9CAA4	1e-113	BIM2_ARATH; Transcription factor BIM2
TrEMBL	A0A1S2XJG1	0.0	A0A1S2XJG1_CICAR; transcription factor BIM2
STRING	XP_004490261.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1730	33	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	1e-116	BES1-interacting Myc-like protein 2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]