PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004490333.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 534aa    MW: 57812.1 Da    PI: 5.2436
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004490333.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.55.8e-09350398355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L+el+P +    sk   Ka +L + ++Y++sLq
  XP_004490333.1 350 NSHSLAERVRREKISERMKFLQELVPGC----SKVTGKAVMLDEIINYVQSLQ 398
                     58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.34E-11345402No hitNo description
SuperFamilySSF474598.51E-17345416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.459347397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-16348414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-6350398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-10353403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MSEKEKFEVD RNGDPMSYSS GMPLDWRFGS GNLVNSSVGL VTIGNSMNIN RGDLIGSSSC  60
SSASMVDTFS PNFWDHPTNS QNLGFCDING SSSNAAGIRK DGFGFGDGFL PNGQGVFQNS  120
LSQFPTDSGF IERAARFSCF GGGNFGDVVS SYGIPQSIGM YGGTVSAIHG NRDELAGIGL  180
KVAIGGQSQD IDPNVVEATK AVSPLIEHMA TQGSPLKNDR SDSRVVSHDD GKQALVRPVN  240
DSDRGESGDD DGDGCGQDDS PMLEGTSGEP SVKGLNSKKR KRNGPDADND RANRTQELQS  300
EGAKDNPEHQ QKGDQQPKAS GKNAKQGSQT SDPPKEEYIH VRARRGQATN SHSLAERVRR  360
EKISERMKFL QELVPGCSKV TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT VNPRLDFNIE  420
GLLAKEILHQ RPGPSSALGF PLEMSMNFPP LHPSQPRMIQ SIIPNIANPS DILRRTIHSH  480
LTPLTGGFKE PNQMPDVWED ELHNVIQMSF ATTAPMSSQD VDGTDTTNQM KVEL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004490333.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150433e-38AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004490333.10.0transcription factor bHLH49
TrEMBLA0A1S2XJK80.0A0A1S2XJK8_CICAR; transcription factor bHLH49
STRINGXP_004490333.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72493248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.38e-88bHLH family protein