PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004490489.2

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

MYB_related

Protein Properties

Length: 265aa MW: 30421.1 Da PI: 6.0488

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004490489.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.9	5.4e-09	209	255	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwq 45 r+ W++eEd +l av+++G g+W+ Ia + R + q+ rw+ XP_004490489.2 209 RKIWSEEEDMQLQAAVQKWGEGNWAQIAGRDDfpVDRNAAQLSKRWR 255 567*************************8766668888888888886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.772	203	262	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-11	206	259	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.59E-12	206	258	IPR009057	Homeodomain-like
SMART	SM00717	2.0E-8	208	260	IPR001005	SANT/Myb domain
Pfam	PF00249	5.1E-7	211	255	IPR001005	SANT/Myb domain
CDD	cd11660	6.34E-11	212	259	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MKRKQQSKNQ NNKLSFTEED SLFLLEKYDA STVLKLLQEI ANHAHWKINW NELVNKSSTG 60 ISSAKEYRIL WRHLAYGYPL IDDYFENQYS SPMDDDSDLE CERETLPAIP QQTALQASAC 120 VEAMIASVSM SQSTPTSLTI EAPLTINVPT HASFSTTYSQ PYYIQEKNIN FPVIVERQPR 180 SNIINVPSTT KDLQENELVN HNTPIQKKRK IWSEEEDMQL QAAVQKWGEG NWAQIAGRDD 240 FPVDRNAAQL SKRWRILRNK AGNTN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004490489.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004490489.3	0.0	telomeric repeat-binding factor 2-like isoform X2
TrEMBL	A0A1S2XJX4	0.0	A0A1S2XJX4_CICAR; telomeric repeat-binding factor 2-like isoform X2
STRING	XP_004490489.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3122	32	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	3e-56	MYB_related family protein