PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004490644.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 364aa    MW: 42444.4 Da    PI: 9.1244
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004490644.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.27.1e-17122168148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd +l++ vkq+G + W+ +a+++  gR +kqc++rw+++l
   XP_004490644.1 122 KGQWTKEEDRKLIRFVKQYGERKWTQVAEKLE-GRVGKQCRERWNNHL 168
                      799*****************************.*************97 PP
2Myb_DNA-binding54.82.1e-17174216145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++W++eE+ +lv  +++lG++ W+ Ia++++ gRt++++k++w+
   XP_004490644.1 174 KDSWSEEEERILVASHAKLGNR-WSEIAKRIP-GRTENSIKNHWN 216
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.131117172IPR017930Myb domain
SMARTSM007176.9E-16121170IPR001005SANT/Myb domain
SuperFamilySSF466891.21E-28121215IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.4E-27123176IPR009057Homeodomain-like
CDDcd001671.07E-14125168No hitNo description
PfamPF139211.9E-19125183No hitNo description
SMARTSM007176.2E-17173221IPR001005SANT/Myb domain
PROSITE profilePS5129420.555173223IPR017930Myb domain
CDDcd001671.91E-12176219No hitNo description
Gene3DG3DSA:1.10.10.607.6E-21177221IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MVRGGNHGGN GVKIFGYENI NANDPFMERF LWDQMIHYHS HQQNNSSVFP YSSGSHYEYK  60
WPNTQESRFV IDHGVLPNEE PLMWTNFNQT STLCLKDIHG YEKNTKIVRR KIKKETSIIS  120
IKGQWTKEED RKLIRFVKQY GERKWTQVAE KLEGRVGKQC RERWNNHLRP DIKKDSWSEE  180
EERILVASHA KLGNRWSEIA KRIPGRTENS IKNHWNATKR RQNSRRKNKR NENSSKGKPK  240
SSILEDYIKT NTSIPTKITT IPSSSHTTLS QNLATNDESN PLSIEPMNES FSNDLLFMQQ  300
LLMGNDQNVV DDVNESGIVY SNQPPNDNIM QLDDDNVVFS PRETSTITND FLPYDFYFSQ  360
LLNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C5e-441212223104C-Myb DNA-Binding Domain
1msf_C5e-441212223104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218229KRRQNSRRKNKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for female gametophyte fertility. Acts redundantly with MYB64 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5. {ECO:0000269|PubMed:24068955}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004490644.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004490644.10.0transcription factor MYB119-like
SwissprotQ9FIM41e-66MY119_ARATH; Transcription factor MYB119
TrEMBLA0A1S2XKB40.0A0A1S2XKB4_CICAR; transcription factor MYB119-like
STRINGXP_004490644.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.13e-53myb domain protein 119
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]