PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004490677.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family WRKY
Protein Properties Length: 239aa    MW: 27753.5 Da    PI: 8.4185
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004490677.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.11.7e-23129185259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgynW+KY  K  kgse+ rsYY+C  ++C vkkkver+  d++++e+ Y+g+Hnh 
  XP_004490677.1 129 DDGYNWKKYEEKLEKGSENQRSYYKCNWPNCAVKKKVERNI-DGEIIETQYKGTHNHY 185
                     8****************************************.***************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.0E-21122187IPR003657WRKY domain
SuperFamilySSF1182901.7E-19125187IPR003657WRKY domain
SMARTSM007741.6E-21128186IPR003657WRKY domain
PfamPF031068.4E-18129184IPR003657WRKY domain
PROSITE profilePS5081119.164129187IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005794Cellular ComponentGolgi apparatus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MPIRISNRVI IIQKKQWRIL GFFSSIIGLI SYALSSSFIH LFGEWNFIKI IIYAMINLML  60
SIVAAIFCYS LMVLRSKFES RPAIGNLRME DDVAIEIFDA EDNNNRNELK NYSNGNQKNE  120
SLRRRVHDDD GYNWKKYEEK LEKGSENQRS YYKCNWPNCA VKKKVERNID GEIIETQYKG  180
THNHYKPKSA MKRNSSSEFV YSLLQSKTFH TDLPDQLLAS QGNEQLDSDA EPESSSVSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-151291871877Probable WRKY transcription factor 4
2lex_A5e-151291871877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004490677.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1351613e-33AC135161.14 Medicago truncatula clone mth2-30k24, complete sequence.
GenBankAC1380123e-33AC138012.32 Medicago truncatula clone mth2-9b15, complete sequence.
GenBankCR9329603e-33CR932960.3 Medicago truncatula chromosome 5 clone mth4-7a5, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004490677.11e-178probable WRKY transcription factor 33 isoform X2
TrEMBLA0A1S2XMR41e-176A0A1S2XMR4_CICAR; probable WRKY transcription factor 33 isoform X2
STRINGXP_004490676.11e-133(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.13e-24WRKY DNA-binding protein 33