PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004490702.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

LBD

Protein Properties

Length: 249aa MW: 27606.2 Da PI: 9.3737

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004490702.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	130.6	6.9e-41	60	159	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+kll ++pe +r da++s+vyeA+ r+rdP+yG++g i++lqqq+++l+ael+ XP_004490702.1 60 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLMEVPEGQRGDAANSMVYEANLRLRDPIYGCMGAISSLQQQVQSLQAELQ 154 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_004490702.1 155 AIRAE 159 99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.076	59	160	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.9E-41	60	157	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MHLNQNFPSS QPPLRSRKKK HVWMSRDRLD ELEKVNSEGE TSLQMGRKHF YGTTLNTVTP 60 CAACKLLRRR CAEECPFSPY FSPHEPQKFA AVHKVFGASN VSKLLMEVPE GQRGDAANSM 120 VYEANLRLRD PIYGCMGAIS SLQQQVQSLQ AELQAIRAEI LKYKYREATN FISSNHSTLV 180 SSMPNSTQNS SQPLSSSSSS LPLPKLLPSH ESIILSSLSS SSASNSVYTS NKSTMSHGSI 240 SSENIPYFV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-45	53	167	4	118	LOB family transfactor Ramosa2.1
5ly0_B	6e-45	53	167	4	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004490702.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT143889	1e-120	BT143889.1 Medicago truncatula clone JCVI-FLMt-13L16 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004490702.1	0.0	LOB domain-containing protein 15 isoform X1
TrEMBL	A0A1S2XKI3	0.0	A0A1S2XKI3_CICAR; LOB domain-containing protein 15 isoform X1
STRING	XP_004490702.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	1e-62	LOB domain-containing protein 13