PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004490703.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

LBD

Protein Properties

Length: 230aa MW: 25244.4 Da PI: 7.4637

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004490703.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	130.8	5.7e-41	41	140	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+kll ++pe +r da++s+vyeA+ r+rdP+yG++g i++lqqq+++l+ael+ XP_004490703.1 41 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLMEVPEGQRGDAANSMVYEANLRLRDPIYGCMGAISSLQQQVQSLQAELQ 135 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_004490703.1 136 AIRAE 140 99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.076	40	141	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.2E-41	41	138	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MFGCQETERL DELEKVNSEG ETSLQMGRKH FYGTTLNTVT PCAACKLLRR RCAEECPFSP 60 YFSPHEPQKF AAVHKVFGAS NVSKLLMEVP EGQRGDAANS MVYEANLRLR DPIYGCMGAI 120 SSLQQQVQSL QAELQAIRAE ILKYKYREAT NFISSNHSTL VSSMPNSTQN SSQPLSSSSS 180 SLPLPKLLPS HESIILSSLS SSSASNSVYT SNKSTMSHGS ISSENIPYFV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-45	34	148	4	118	LOB family transfactor Ramosa2.1
5ly0_B	3e-45	34	148	4	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004490703.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT143889	1e-120	BT143889.1 Medicago truncatula clone JCVI-FLMt-13L16 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004490703.1	1e-169	LOB domain-containing protein 13 isoform X2
Swissprot	Q9AT61	2e-72	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A1S2XMT7	1e-168	A0A1S2XMT7_CICAR; LOB domain-containing protein 13 isoform X2
STRING	XP_004490702.1	1e-161	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	8e-63	LOB domain-containing protein 13

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]