PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004490843.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB_related
Protein Properties Length: 239aa    MW: 27294.1 Da    PI: 6.7138
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004490843.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.3e-0968912448
                     HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqkyl 48
                     W++Ia++++ gRt++++k++w+++l
   XP_004490843.1 68 WSLIAARLP-GRTANDVKNYWHTHL 91
                     *********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.2846891IPR017877Myb-like domain
SuperFamilySSF466896.44E-76897IPR009057Homeodomain-like
CDDcd001672.36E-66891No hitNo description
Gene3DG3DSA:1.10.10.601.7E-1168100IPR009057Homeodomain-like
PfamPF002491.6E-66891IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MANNSIQTLT RLRIVARYHK IQFQSGNNRT ELFHQVVITK DQFVLPESCS VSLIALQVAD  60
EFAMMAIWSL IAARLPGRTA NDVKNYWHTH LRKKTIVSKK EENKEKEKPK ETMKPHEIIK  120
PQPRTFSSHS LWLNGKHNFL KPFMVSNKDG DIAKDSESMV PIGDGGDCST MSAMWWKSLL  180
HVNDDKINEK IGSCSLLQDD PTLELPNLEN FLNEDPSVSD CYWGSNNPCE FDSILDFLN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004490843.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT5735092e-59CT573509.1 Medicago truncatula chromosome 5 clone mth2-40e2, COMPLETE SEQUENCE.
GenBankFJ1999972e-59FJ199997.1 Medicago truncatula MYB transcription factor LAP4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027187978.11e-126transcription factor MYB113, partial
TrEMBLA0A3Q7XME51e-125A0A3Q7XME5_CICAR; transcription factor MYB113
STRINGXP_004490843.11e-179(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1672278
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.16e-13myb domain protein 113