PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004490862.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 218aa    MW: 24902.3 Da    PI: 8.1579
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004490862.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.5e-171360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+++Ed++l+d+++ +G g+W +I++  g+ R++k+c++rw++yl
   XP_004490862.1 13 KGSWSKQEDQKLIDYIRVHGEGCWGSIPKAAGLQRCGKSCRLRWLNYL 60
                     799*******************************************97 PP
2Myb_DNA-binding48.61.9e-1567110247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      g + ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++
   XP_004490862.1  67 GIFAQDEEDLIIKLHALLGNR-WALIAGRLP-GRTDNEVKNYWNSH 110
                      66779****************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-24462IPR009057Homeodomain-like
PROSITE profilePS5129417.89860IPR017930Myb domain
SuperFamilySSF466895.59E-2810107IPR009057Homeodomain-like
SMARTSM007179.4E-141262IPR001005SANT/Myb domain
PfamPF002494.4E-161360IPR001005SANT/Myb domain
CDDcd001672.26E-111560No hitNo description
PROSITE profilePS5129425.01161115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-2463116IPR009057Homeodomain-like
SMARTSM007173.5E-1465113IPR001005SANT/Myb domain
PfamPF002497.9E-1469110IPR001005SANT/Myb domain
CDDcd001672.01E-1071111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MRKPCCDKEN INKGSWSKQE DQKLIDYIRV HGEGCWGSIP KAAGLQRCGK SCRLRWLNYL  60
RPDIKRGIFA QDEEDLIIKL HALLGNRWAL IAGRLPGRTD NEVKNYWNSH IRRKLIKMGI  120
DPNNHKLHQG FPRPCHVFGA GTSSCDESMN KDHKLSFTKE FEDDQETTII INNSSSSLNL  180
DLTIALPSPN RVVVVDDKTI PNCDESRTTR DMDIDLNC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-291111525128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004490862.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT6991091e-155KT699109.1 Trifolium repens MYB134 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004490862.11e-162transcription factor MYB3-like
SwissprotQ9S9K97e-71MYB3_ARATH; Transcription factor MYB3
TrEMBLA0A1S2XKT41e-161A0A1S2XKT4_CICAR; transcription factor MYB3-like
STRINGXP_004490862.11e-161(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.19e-73myb domain protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  3. Wada T,Hayashi N,Tominaga-Wada R
    Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1089372
    [PMID:26339713]
  4. Wada T,Tominaga-Wada R
    CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression.
    Plant Sci., 2015. 241: p. 260-5
    [PMID:26706076]
  5. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  6. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  7. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]