PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004490914.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 237aa    MW: 27518.7 Da    PI: 9.9169
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004490914.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.6e-056284123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C++ F++   L  H++ H
  XP_004490914.1 62 YSCNFCKREFRSAQALGGHMNIH 84
                    99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.07E-65989No hitNo description
Gene3DG3DSA:3.30.160.604.7E-46086IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.1776289IPR007087Zinc finger, C2H2
PfamPF139124.5E-66285IPR007087Zinc finger, C2H2
SMARTSM003550.0086284IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MEGYHSDQYW FWMKRRQILT SNLQLQASNG NNNKNNSWEE RAFAEDAARN ILNGSIWPPR  60
SYSCNFCKRE FRSAQALGGH MNIHRRDRAR LKQNHDQESL FDHHHQKKNI NNDFGNHYFS  120
SKIMSSHIDS YNHYQIIKPC STRRRSISPS RMISSSSSSL HNDCVETSLS LGLTSMFGQK  180
TSSSNVVPCE EKVKRLKTTN NISSLHSVFF KTCSNDHHHG MEDLDLELRL GKQQKVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A5e-135784229superman protein
2l1o_A5e-135784229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004490914.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9541914e-57CR954191.3 Medicago truncatula chromosome 5 clone mte1-26e13, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003616466.23e-84probable transcriptional regulator RABBIT EARS
TrEMBLG7KGU78e-83G7KGU7_MEDTR; Putative transcription factor C2H2 family
STRINGXP_004490914.11e-178(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.16e-28zinc-finger protein 10