PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004490916.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

LBD

Protein Properties

Length: 206aa MW: 22891.5 Da PI: 6.2681

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004490916.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	121.7	4.1e-38	7	105	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC++dCv+apyf +q + +fa+vhk++Gasnv+kll++lp ++r+da+ ++ yeA ar++dP+yG+v++i +lq+q+++l++e+ XP_004490916.1 7 SCGACKLLRRKCSNDCVFAPYFSYDQaSTHFAAVHKVYGASNVSKLLSHLPIHNRSDAAITISYEALARMQDPIYGCVAHIYALQHQVASLQEEI 101 6*********************99779***************************************************************9 PP DUF260 95 allk 98 + l+ XP_004490916.1 102 DILG 105 8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.432	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-36	7	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MTGFGSSCGA CKLLRRKCSN DCVFAPYFSY DQASTHFAAV HKVYGASNVS KLLSHLPIHN 60 RSDAAITISY EALARMQDPI YGCVAHIYAL QHQVASLQEE IDILGSLIAN SSVSVVNYDN 120 VQATMNSNNG TQYYHNQMAN FLSHEGGATY QSFNSYMDME LPYAHGLAEP LYGDSNSNLL 180 EKFLSGIDQE GFLNHPWFKH NENMKN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-36	3	102	7	105	LOB family transfactor Ramosa2.1
5ly0_B	2e-36	3	102	7	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004490916.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:17259263}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC129090	1e-103	AC129090.23 Medicago truncatula clone mth2-14i8, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004490916.1	1e-154	LOB domain-containing protein 33
Swissprot	Q9LHS8	4e-56	LBD33_ARATH; LOB domain-containing protein 33
TrEMBL	A0A1S2XMF8	1e-153	A0A1S2XMF8_CICAR; LOB domain-containing protein 33
STRING	XP_004490916.1	1e-153	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9196	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06080.1	7e-58	LOB domain-containing protein 33

Publications ? help Back to Top
Bargmann BO,Birnbaum KD,Brenner ED An undergraduate study of two transcription factors that promote lateral root formation. Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45 [PMID:24615800]