PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004490951.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 285aa    MW: 32564.5 Da    PI: 8.4156
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004490951.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.5e-082471146
                     TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     ++ WT+e+ +++  a + + ++   +W ++a++++ g+t  +++  ++ 
   XP_004490951.1 24 KKEWTKEDNKKFESALAIYDKDtpdRWIKVAEMIP-GKTVFDVIKQYRE 71
                     679********************************.****999999885 PP
2Myb_DNA-binding42.41.6e-13126170347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ +  ++G+g+W+ I+r +  ++t+ q+ s+ qky
   XP_004490951.1 126 PWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKY 170
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.5272276IPR017884SANT domain
SMARTSM007172.1E-82375IPR001005SANT/Myb domain
PfamPF002491.2E-62471IPR001005SANT/Myb domain
SuperFamilySSF466894.79E-122479IPR009057Homeodomain-like
CDDcd001672.08E-62672No hitNo description
PROSITE profilePS5129420.215119175IPR017930Myb domain
SuperFamilySSF466893.52E-16121175IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-17122174IPR006447Myb domain, plants
SMARTSM007175.6E-11123173IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-11123169IPR009057Homeodomain-like
CDDcd001671.20E-8126170No hitNo description
PfamPF002495.3E-11126170IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MDLETLYSPY SMLDSNWFVE ESYKKEWTKE DNKKFESALA IYDKDTPDRW IKVAEMIPGK  60
TVFDVIKQYR ELEEDVCEIE AGNVPLPGYF ASSFTFEVVD NHNYDGSRRR ALSVRGSDHE  120
RKKGVPWTEE EHRRFLMGLL KYGKGDWRNI SRNFVVTKTP TQVASHAQKY YIRQKVSGGK  180
DKRRPSIHDI TTLSLTQTSS SNKNINPNMS KVQMGWSSSH CNDGSLMAFN PNSDDFTSKS  240
LKIQGQDLYD CSFHEAYAKM KVSGFAATAA SRDFNKGAVF GIHAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-1725115993RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004490951.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0519841e-174BT051984.1 Medicago truncatula clone MTYF9_FA_FB_FC1G-K-6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004490951.10.0transcription factor DIVARICATA-like
SwissprotQ8S9H73e-82DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A1S2XL040.0A0A1S2XL04_CICAR; transcription factor DIVARICATA-like
STRINGXP_004490951.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.14e-86MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]