PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004491022.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

LBD

Protein Properties

Length: 191aa MW: 21660.5 Da PI: 7.7019

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004491022.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.1	1.4e-38	25	124	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+l+r+C ++C++apyf +++ kkfa vhk+FGasnv+k+l ++pee+re++++sl++eA+ar+rdPvyG++g i lq+++ +l+++la XP_004491022.1 25 SCAACKFLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVPEEQREETVNSLAFEADARLRDPVYGCIGAIAILQRKMFELQHDLA 119 6*********************************************************************************************9 PP DUF260 96 llkee 100 +k++ XP_004491022.1 120 IAKDR 124 99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.133	24	125	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.7E-38	25	122	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MNQNSNSEKH RFMKMKGYEP RSSSSCAACK FLKRRCIPNC IFAPYFRSDE CKKFAKVHKV 60 FGASNVSKIL IEVPEEQREE TVNSLAFEAD ARLRDPVYGC IGAIAILQRK MFELQHDLAI 120 AKDRLAHYSA AASSSNSSFS NDFINSQVCL PPLPDFFTCS DFNDNFSQTS SSQSFSRNDT 180 VDDFIQIPYI F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-45	20	129	6	115	LOB family transfactor Ramosa2.1
5ly0_B	3e-45	20	129	6	115	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004491022.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004491022.1	1e-139	LOB domain-containing protein 21
Swissprot	Q9SRL8	4e-63	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A1S2XNG7	1e-138	A0A1S2XNG7_CICAR; LOB domain-containing protein 21
STRING	XP_004491022.1	1e-139	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5944	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	2e-63	LOB domain-containing protein 21

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]