PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004491024.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 258aa    MW: 28825.3 Da    PI: 7.5045
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004491024.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.6e-182065147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W+++Ed  lv++v+++G+++W+ I++ ++ gR++k+c++rw + 
   XP_004491024.1 20 KGSWSPQEDATLVKLVTEHGPRNWSVISNGIP-GRSGKSCRLRWCNQ 65
                     799*****************************.***********985 PP
2Myb_DNA-binding55.31.5e-1774116347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++++ Ed+++++a++ +G++ W+tI+r ++ gRt++ +k++w++ 
   XP_004491024.1  74 PFSPSEDKIIIKAHAIHGNK-WATISRLLP-GRTDNAIKNHWNST 116
                      79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.2891566IPR017930Myb domain
SuperFamilySSF466891.2E-2917113IPR009057Homeodomain-like
SMARTSM007177.9E-151968IPR001005SANT/Myb domain
PfamPF002491.3E-172065IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-242173IPR009057Homeodomain-like
CDDcd001671.55E-142264No hitNo description
PROSITE profilePS5129425.1867121IPR017930Myb domain
SMARTSM007174.1E-1571119IPR001005SANT/Myb domain
CDDcd001675.95E-1374117No hitNo description
PfamPF002496.4E-1574116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-2374120IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MMIGANSNSS SGDDNGDKVK GSWSPQEDAT LVKLVTEHGP RNWSVISNGI PGRSGKSCRL  60
RWCNQLSPDV QHRPFSPSED KIIIKAHAIH GNKWATISRL LPGRTDNAIK NHWNSTLRRQ  120
HMEVPIIPSS VGIGKRPPNA YDGYNSLLDL RCPYKRPCLE NNSSRDGEET VTEEEDAGNN  180
VTVTTSLSLF PPGEKFMKEE ENKKEEIFEA NGNVFGNDCL KSIIQRMIAE EVRNYVDNMR  240
RDGFQLGTGL APDSTFRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-37191203104MYB PROTO-ONCOGENE PROTEIN
1h88_C8e-371512053158MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-371512053158MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-37191203104C-Myb DNA-Binding Domain
1msf_C2e-37191203104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004491024.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004491024.10.0transcription factor MYB44-like
TrEMBLA0A1S2XMN20.0A0A1S2XMN2_CICAR; transcription factor MYB44-like
STRINGXP_004491024.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116002935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.15e-51myb domain protein 73