PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004491050.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

LBD

Protein Properties

Length: 199aa MW: 22150.2 Da PI: 8.1133

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004491050.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.1	2.2e-41	39	138	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l +++e++r da++slvyeA++r+rdPvyG++g i++lqqq+++l +el+ XP_004491050.1 39 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKIFGASNVSKMLMEVSENQRADAANSLVYEANVRLRDPVYGCMGAISSLQQQVQSLLSELN 133 7********************************************************************************************** PP DUF260 96 llkee 100 +++ee XP_004491050.1 134 AIREE 138 99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.407	38	139	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-40	39	136	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MSRERERYLD EIGKKKEGDG CFKKGRMLGG SGTLNTTTPC AACKLLRRRC AQECPFSPYF 60 SPHEPQKFAS VHKIFGASNV SKMLMEVSEN QRADAANSLV YEANVRLRDP VYGCMGAISS 120 LQQQVQSLLS ELNAIREEIH KYKLIEANML PSSEATVSIA TLPTPSTTTL PMLPSSIYTQ 180 QDNPTNYNTI STDHISYFN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-44	33	158	5	130	LOB family transfactor Ramosa2.1
5ly0_B	2e-44	33	158	5	130	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004491050.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CR938710	1e-104	CR938710.1 Medicago truncatula chromosome 5 clone mth2-170k9, COMPLETE SEQUENCE.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004491050.1	1e-149	LOB domain-containing protein 15-like
Swissprot	Q8L5T5	3e-69	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A1S2XL84	1e-148	A0A1S2XL84_CICAR; LOB domain-containing protein 15-like
STRING	XP_004491050.1	1e-148	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	6e-68	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]