PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004491167.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

FAR1

Protein Properties

Length: 936aa MW: 105141 Da PI: 7.0648

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004491167.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	49.7	1.2e-15	62	136	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA++ GFs + + + + +g+ + r+fvCs+eg +++ +++ C a+++++++ ++kw+v+k+++eHnH++a XP_004491167.1 62 FYSEYARRSGFSSKAGLHGQFNADGTNMFREFVCSREGLKRKMTES--------------CGAMIRIEQKGQNKWVVAKFVKEHNHSMA 136 *************************************9998766..............************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.1E-12	62	135	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.5E-23	277	369	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.449	555	591	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.5E-10	555	587	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.7E-7	566	593	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 936 aa Download sequence Send to blast
MDVHVINVGE GSGHRGMENG GDVELGEGEV SNAGNSGSHV EDMVFEPYLG MEFDSEDSAK 60 TFYSEYARRS GFSSKAGLHG QFNADGTNMF REFVCSREGL KRKMTESCGA MIRIEQKGQN 120 KWVVAKFVKE HNHSMAVPDK VDKLRPQKHF SSVGRTMPET YKGVGLVPSG VMYISIDGNH 180 VSSENSQKSR NYPAAAAAKT SHLVKNATSM TYTVRQPNQK RTLGKDAENL LEYFKKVQAE 240 NPGFFYAIQL DEDNRMSNVF WADARSRTAY SHFGDAVTLE TAYRANQYNV PFAPFTGINH 300 HGQMILFGCG LIFDDSEASF GWLCKTFLAA MNDRHPISIT TDQNRSIQTA VSQVFPQARH 360 CINKRHVLRE GHKKLDHVCR MYPNFQCELY NCINLTETTE EFDLSWNSII DKYQIRGHDW 420 LQSLYSTRAQ WVPAYFRDSF FAVISPYQGF NGSFFDGFVN QYTTLPMFFR QYELALERWF 480 EKEIELDFET ICTAPVLKTP SPMENQVAKL YTRKIFLKFQ EELVETFAYT ANRIEEDGEN 540 SIFSVAKFED DQKLYTVTLK QSELRANCSC QMFEYSGILC RHVLTVFMVS NVFTIPSHYI 600 LKRWTRDAKS SVVLDDCAGE SHGHESLTSR YTNLCREAIR YAEEGAVAVE TYDAAMGVLR 660 EGGKKIAVTK RSIAKVAPPN QQVSGNTCTD KKTPTSTSDT TPLLWPLNDE TTGFNLNDVG 720 APVLPVADLN LPQTTPPPHK RVDVAAPVSR QRVDGPSPVP RKRVDGPRSV PRKRVDGPSA 780 MSRQRDDGPP PVPLQQDDGP PENTVVFPCL KSMTWVMENK TSTPGNRVAV INLKLQDYSK 840 NPSAEYEVKF HLSRVNVEPV LKSMAEVSEQ LSTTSSKVAV INLKHEDAQT SGESEVKFQV 900 SRDALGAVLR SMAYIREQLS CAGDAHSEPV SKKLRN

Sequence ? help Back to Top

Protein Sequence Length: 936 aa Download sequence Send to blast

MDVHVINVGE GSGHRGMENG GDVELGEGEV SNAGNSGSHV EDMVFEPYLG MEFDSEDSAK  60
TFYSEYARRS GFSSKAGLHG QFNADGTNMF REFVCSREGL KRKMTESCGA MIRIEQKGQN  120
KWVVAKFVKE HNHSMAVPDK VDKLRPQKHF SSVGRTMPET YKGVGLVPSG VMYISIDGNH  180
VSSENSQKSR NYPAAAAAKT SHLVKNATSM TYTVRQPNQK RTLGKDAENL LEYFKKVQAE  240
NPGFFYAIQL DEDNRMSNVF WADARSRTAY SHFGDAVTLE TAYRANQYNV PFAPFTGINH  300
HGQMILFGCG LIFDDSEASF GWLCKTFLAA MNDRHPISIT TDQNRSIQTA VSQVFPQARH  360
CINKRHVLRE GHKKLDHVCR MYPNFQCELY NCINLTETTE EFDLSWNSII DKYQIRGHDW  420
LQSLYSTRAQ WVPAYFRDSF FAVISPYQGF NGSFFDGFVN QYTTLPMFFR QYELALERWF  480
EKEIELDFET ICTAPVLKTP SPMENQVAKL YTRKIFLKFQ EELVETFAYT ANRIEEDGEN  540
SIFSVAKFED DQKLYTVTLK QSELRANCSC QMFEYSGILC RHVLTVFMVS NVFTIPSHYI  600
LKRWTRDAKS SVVLDDCAGE SHGHESLTSR YTNLCREAIR YAEEGAVAVE TYDAAMGVLR  660
EGGKKIAVTK RSIAKVAPPN QQVSGNTCTD KKTPTSTSDT TPLLWPLNDE TTGFNLNDVG  720
APVLPVADLN LPQTTPPPHK RVDVAAPVSR QRVDGPSPVP RKRVDGPRSV PRKRVDGPSA  780
MSRQRDDGPP PVPLQQDDGP PENTVVFPCL KSMTWVMENK TSTPGNRVAV INLKLQDYSK  840
NPSAEYEVKF HLSRVNVEPV LKSMAEVSEQ LSTTSSKVAV INLKHEDAQT SGESEVKFQV  900
SRDALGAVLR SMAYIREQLS CAGDAHSEPV SKKLRN

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004491167.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CR931734	0.0	CR931734.2 Medicago truncatula chromosome 5 clone mth2-62m24, COMPLETE SEQUENCE.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004491167.1	0.0	protein FAR1-RELATED SEQUENCE 3
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A1S3DYQ0	0.0	A0A1S3DYQ0_CICAR; protein FAR1-RELATED SEQUENCE 3
STRING	XP_004491167.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]