PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004491224.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

HSF

Protein Properties

Length: 257aa MW: 30173 Da PI: 7.6413

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004491224.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	111.9	4.4e-35	27	118	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl k+y++++d+ +++++sw +++++fvv+ + efa+++Lp++Fkh+nf+SFvRQLn+YgFkkv ++ weF++++Fkkg k+ll++ XP_004491224.1 27 FLIKTYQLVDDPLTDHIVSWGDDQTTFVVWRPPEFARDLLPNFFKHNNFSSFVRQLNTYGFKKVVADR---------WEFANEYFKKGAKHLLCE 112 9**************************************************************999.........************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i+r+k+ XP_004491224.1 113 IHRRKT 118 **97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.8E-37	18	111	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.7E-56	23	116	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	1.9E-32	24	116	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	7.6E-31	27	116	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.9E-18	27	50	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.9E-18	65	77	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	66	90	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.9E-18	78	90	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MAFTLERCED NNMVFTMESQ KSVPAPFLIK TYQLVDDPLT DHIVSWGDDQ TTFVVWRPPE 60 FARDLLPNFF KHNNFSSFVR QLNTYGFKKV VADRWEFANE YFKKGAKHLL CEIHRRKTPQ 120 HYQQQYYEQQ QQHFQQDESI CWIDTSLPSP KSSTGTDILT ALSEDNQRLR RKNFMLLSEL 180 THMKNLYNDI IYFIQNHVTP ATHFEQRSNN NKIVELDSAT KISTNDATHQ FKDCNTSVKL 240 FGVPLCGKKR LHPGNVD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	6e-20	17	118	11	122	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269\|PubMed:16202242}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004491224.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC136507	1e-105	AC136507.19 Medicago truncatula clone mth2-24o19, complete sequence.
GenBank	AC146941	1e-105	AC146941.8 Medicago truncatula clone mth2-133o10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004491224.1	0.0	heat stress transcription factor B-4b
Swissprot	Q7XHZ0	3e-87	HFB4B_ORYSJ; Heat stress transcription factor B-4b
TrEMBL	A0A1S2XN22	0.0	A0A1S2XN22_CICAR; heat stress transcription factor B-4b
STRING	XP_004491224.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1612	33	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46264.1	1e-84	heat shock transcription factor B4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]