PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004491641.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family Nin-like
Protein Properties Length: 967aa    MW: 106275 Da    PI: 6.6844
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004491641.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK90.11.8e-28627678152
          RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                     aek+isl +l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++
  XP_004491641.1 627 AEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 678
                     589***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.37617698IPR003035RWP-RK domain
PfamPF020424.7E-24631678IPR003035RWP-RK domain
SuperFamilySSF542771.9E-21853948No hitNo description
Gene3DG3DSA:3.10.20.2403.0E-22862943No hitNo description
PROSITE profilePS5174519.989863946IPR000270PB1 domain
SMARTSM006662.4E-24863946IPR000270PB1 domain
CDDcd064078.56E-36864945No hitNo description
PfamPF005642.5E-11864945IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 967 aa     Download sequence    Send to blast
MEYGGGLVED CGGFGTMVGG ETDMIEELLV EGCWVEASEN NLMMMHHDDH MSSSTTPQPH  60
YIPMGDNDEE SGNFVVGKRW WIGPQANPGP STSVKERLVL AVGYLKEYTK NSNSNSTSNS  120
NSNSNSNSNV LIQIWVPLRR RSGLFHNQYH NPNPVHESLP ISVPNSNVQV RFFRSHEYPR  180
VQAHHGSLLA LPVFERGTAT CLGVIEFLIA NQNLINYRPQ LDHLSNALEA VDFTSNQNMI  240
PPAVKVFEEL YEAAVNEIVQ VLASVCKTHN LPLALTWAPC IQQEGGGRGK GGCSNSNGNS  300
NSNSNGSNNN MMMSCVSTVD SACYIGDVDV LGFQEACSEY HLYNGQGIVG TAFTTTKPCF  360
AIDITAFSKA EYPLAHHANM FGLHAAVAIP LRSVYTGSAA DFVLEFFLPK DCLDTHQQKH  420
MLNSLSLVVQ QACRSLHLHV VMEDDHHNHN HHHLHHQHQH QHQHEEDQFT FPTTNIYMPS  480
VDAAAAAPVV VLSQVEADAS ASASACSTKE TTSSSCSWIA HMMEAQHKGK GVSVSLEYLQ  540
EPKEEFKVTT CNWEREREGN SVFSEFGQVL QQQQHEHQSM SNSRASTVVS VEGGEESGGG  600
GGSGGGGRRS SCSSNGRKSG DKRRTKAEKT ISLPVLRQYF AGSLKDAAKS IGVCPTTLKR  660
ICRQHGITRW PSRKIKKVGH SLKKLQLVID SVQGAEGAIQ IGSFYASFPE LSSATGHSDQ  720
SSMKLMHNHG VSDHHNSFYG DGGVTTSNLK SPSSACSQTV GNQTNSTLIN NNVVLMTESN  780
ALASTDHAHA HAHAAALMQI RRTHSEAELL HHHTSNIDIQ DYQLHDQDTK QLLLHFNKSQ  840
TLPPRPSTTT TTNGYNNSLE RGAFRVKATF ADEKIRFSLQ GMWCFRDLQV EIARRFNLND  900
MNNLVVKYLD DEGEWVVLAC DGDLEECKDL HTSSHTRTIR LSLFQASPLN LHPNTFRNTS  960
SSPPSSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004491641.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM5013581e-125AM501358.1 Medicago truncatula var. truncatula partial NIN gene for nodule inception protein, specimen voucher L000448 (INRA-SGAP).
GenBankAM5013591e-125AM501359.1 Medicago truncatula var. truncatula partial NIN gene for nodule inception protein, specimen voucher L000526 (INRA-SGAP).
GenBankAM5013621e-125AM501362.1 Medicago truncatula var. truncatula partial NIN gene for nodule inception protein, specimen voucher L000547 (INRA-SGAP).
GenBankAM5013721e-125AM501372.1 Medicago truncatula var. truncatula partial NIN gene for nodule inception protein, specimen voucher L000410 (INRA-SGAP).
GenBankAM5013781e-125AM501378.1 Medicago truncatula var. truncatula partial NIN gene for nodule inception protein, specimen voucher L000482 (INRA-SGAP).
GenBankAM7740041e-125AM774004.1 Medicago tornata partial NIN gene for nodule inception protein, specimen voucher L000750 (INRA-SGAP), exons 1-5.
GenBankHQ7377031e-125HQ737703.1 Medicago truncatula isolate L0482C nin gene, partial sequence.
GenBankHQ7377061e-125HQ737706.1 Medicago truncatula isolate L0547B nin gene, partial sequence.
GenBankHQ7377071e-125HQ737707.1 Medicago truncatula isolate L0448B nin gene, partial sequence.
GenBankHQ7377141e-125HQ737714.1 Medicago truncatula isolate L0410B nin gene, partial sequence.
GenBankHQ7377191e-125HQ737719.1 Medicago truncatula isolate L0526C nin gene, partial sequence.
GenBankHQ7377251e-125HQ737725.1 Medicago tornata isolate L0750D nin gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004491641.10.0protein NLP1
RefseqXP_027187410.10.0protein NLP1
TrEMBLA0A1S2XNX20.0A0A1S2XNX2_CICAR; protein NLP1
STRINGXP_004491641.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12373399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20640.25e-83Nin-like family protein