PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004491651.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

FAR1

Protein Properties

Length: 776aa MW: 89784.2 Da PI: 6.5119

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004491651.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	98.4	7.7e-31	66	158	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r +tr+gCka+l vk+++ +gkw v+ ++ eHnHel+p XP_004491651.1 66 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRtkDREIKRPRIVTRVGCKASLSVKMQDsSGKWIVSGFVREHNHELVP 158 9*************************************998888545677889**************9***************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-28	66	158	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-31	281	373	IPR018289	MULE transposase domain
Pfam	PF04434	2.9E-12	549	595	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.276	561	597	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.2E-9	572	599	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 776 aa Download sequence Send to blast
MDNDNDVVEF DIEIDEEEEE EDDDELELDL DMDLGESSGA VYFPEAGDLE PSEGMEFESE 60 EAAKGFYNSY ARRVGFSTRV SSSRRSRRDG AIIQRQFVCA KEGFRNLNEK RTKDREIKRP 120 RIVTRVGCKA SLSVKMQDSS GKWIVSGFVR EHNHELVPPD QVHCLRSHRQ ISGSAKTLID 180 TLQAAGMGPR RIMSALIKEY GGISKVGFTE VDCRNYMRNN RHRSSLHGDI QLVLDYLRQM 240 HAQNPNFFYA VQGDHDHDDI TNLFWADPKA RLNYTFFGDT VTFDTTYRSN RYRLPFAPFT 300 GVNHHGQPVL FGCAFLINES QASFVWLFKT WLMAMSGRPP LSITTDHDSV IQSAIIQVFP 360 ETRHRYCKWH IFKQCQEKLS HIFLKFPNFE AEFHKCVNLT ESIDEFESSW SILVDRYDLR 420 DNEWLQAIHS ASRQWVPVYL RDTFFAEMSI TQRSDSMNSY FDGYVNASTS LNQFLKLYEK 480 ALESRNEKEV RADYDTMNTL PILRTPSPME KQASRLYTRK IFTRFQEELV GTLTFMASKA 540 EDDGEVITYH VAKFGEDHKI YNVKFNVLEM KATCSCQMFE FSGLLCRHIL AVFRVTNVLT 600 LPSHYILKRW TRNAKSNVIL EEHSCDVYTY YLESHTVRYN TLRHEAFKFV DKGASSPETY 660 DVAKDALQEA AKRVAQVMRN EGRIPISNGK VRSHLLNDES RANYTSGCQE QSLGQHSNKD 720 DMDKHITKLM NELACANRKC EIYRSNLLSV LKAVEDHKLE LSVKVENIKI SMKDDF

Sequence ? help Back to Top

Protein Sequence Length: 776 aa Download sequence Send to blast

MDNDNDVVEF DIEIDEEEEE EDDDELELDL DMDLGESSGA VYFPEAGDLE PSEGMEFESE  60
EAAKGFYNSY ARRVGFSTRV SSSRRSRRDG AIIQRQFVCA KEGFRNLNEK RTKDREIKRP  120
RIVTRVGCKA SLSVKMQDSS GKWIVSGFVR EHNHELVPPD QVHCLRSHRQ ISGSAKTLID  180
TLQAAGMGPR RIMSALIKEY GGISKVGFTE VDCRNYMRNN RHRSSLHGDI QLVLDYLRQM  240
HAQNPNFFYA VQGDHDHDDI TNLFWADPKA RLNYTFFGDT VTFDTTYRSN RYRLPFAPFT  300
GVNHHGQPVL FGCAFLINES QASFVWLFKT WLMAMSGRPP LSITTDHDSV IQSAIIQVFP  360
ETRHRYCKWH IFKQCQEKLS HIFLKFPNFE AEFHKCVNLT ESIDEFESSW SILVDRYDLR  420
DNEWLQAIHS ASRQWVPVYL RDTFFAEMSI TQRSDSMNSY FDGYVNASTS LNQFLKLYEK  480
ALESRNEKEV RADYDTMNTL PILRTPSPME KQASRLYTRK IFTRFQEELV GTLTFMASKA  540
EDDGEVITYH VAKFGEDHKI YNVKFNVLEM KATCSCQMFE FSGLLCRHIL AVFRVTNVLT  600
LPSHYILKRW TRNAKSNVIL EEHSCDVYTY YLESHTVRYN TLRHEAFKFV DKGASSPETY  660
DVAKDALQEA AKRVAQVMRN EGRIPISNGK VRSHLLNDES RANYTSGCQE QSLGQHSNKD  720
DMDKHITKLM NELACANRKC EIYRSNLLSV LKAVEDHKLE LSVKVENIKI SMKDDF

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004491651.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT009656	0.0	CT009656.3 Medicago truncatula chromosome 5 clone mth2-154o18, COMPLETE SEQUENCE.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004491651.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1S2XMM0	0.0	A0A1S2XMM0_CICAR; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_004491651.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]