PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004491748.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 292aa    MW: 33734.2 Da    PI: 7.5264
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004491748.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.21.9e-134390148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd +lv  +   G ++W+ +++  g+ R++k+c++rw +yl
   XP_004491748.1 43 RGPWTIEEDHKLVSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYL 90
                     89******************************99************97 PP
2Myb_DNA-binding537.8e-1796139146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+ E++++++++++lG++ W++Ia++++ gRt++++k++w++
   XP_004491748.1  96 RGNYTEIEEDQIIQLHARLGNR-WSKIASHFP-GRTDNEIKNHWNT 139
                      8999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.8E-203493IPR009057Homeodomain-like
PROSITE profilePS5129413.5743890IPR017930Myb domain
SuperFamilySSF466892.7E-2840137IPR009057Homeodomain-like
SMARTSM007171.3E-64292IPR001005SANT/Myb domain
PfamPF002494.1E-114390IPR001005SANT/Myb domain
CDDcd001679.12E-54590No hitNo description
PROSITE profilePS5129424.78191145IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.7E-2594146IPR009057Homeodomain-like
SMARTSM007175.7E-1795143IPR001005SANT/Myb domain
PfamPF002491.6E-1596139IPR001005SANT/Myb domain
CDDcd001673.38E-1198139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MNWQHLCLSL KFLLNSHFFN FITLPKVKKM GRQPCCDKVG LKRGPWTIEE DHKLVSFILN  60
NGIHCWRMVP KLAGLLRCGK SCRLRWINYL RPDLKRGNYT EIEEDQIIQL HARLGNRWSK  120
IASHFPGRTD NEIKNHWNTK IKKKLKLLGV DPLTHKPIEQ KQQIDDDDDD DKNKTNKQPN  180
NISAGYEENV GIKLLGSDGT KENKVTWDDT AFEMLCSNLD LGTWMNQDTN TSTNSVSSSC  240
VSMDDTSHIS VDESSYLHQN SLQEWVNSMN SILSWDGFNP LDQDISFLER NK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27411455108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00510DAPTransfer from AT5G14340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004491748.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150444e-36AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004491748.10.0myb-related protein 315
SwissprotP813944e-79MYB15_ANTMA; Myb-related protein 315
TrEMBLA0A1S2XP460.0A0A1S2XP46_CICAR; myb-related protein 315
STRINGXP_004491748.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66253150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.12e-81myb domain protein 40
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]