PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004492094.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

WOX

Protein Properties

Length: 204aa MW: 22960.4 Da PI: 5.1046

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004492094.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.6	1.6e-21	33	93	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ Fe + +ps+e+++e+++ l +++e++V++WFqNrRa+ k+ XP_004492094.1 33 RQRWTPTPLQLQILERIFEAgTGTPSKEKIKEITADLskhgQISETNVYNWFQNRRARSKR 93 89***************99************************************97 PP
2	Wus_type_Homeobox	103.4	1.5e-33	32	95	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPtp Q++iLe+++++G+ tP+ke+i++ita L+++G+i+++NV++WFQNr+aR+++kq XP_004492094.1 32 SRQRWTPTPLQLQILERIFEAGTGTPSKEKIKEITADLSKHGQISETNVYNWFQNRRARSKRKQ 95 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.1E-18	27	98	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.819	29	94	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.11E-18	30	97	IPR009057	Homeodomain-like
SMART	SM00389	2.7E-14	31	98	IPR001356	Homeobox domain
Pfam	PF00046	2.5E-19	33	93	IPR001356	Homeobox domain
CDD	cd00086	7.14E-14	33	95	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MRTSQLPIMK GARLGGMYCD QLMGSGGHKI SSRQRWTPTP LQLQILERIF EAGTGTPSKE 60 KIKEITADLS KHGQISETNV YNWFQNRRAR SKRKQQNAAP SSVNAESEVE NEVDSNNNKI 120 ILDEFVVPQP AENLSFQNPQ VCSDLQYFNP ESDDSLRLAR NFDHEPVFDG MLSNSRSSDY 180 LTGKIETSES FNLYQSAGDY GMEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	86	94	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004492094.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004492094.1	1e-153	WUSCHEL-related homeobox 13-like isoform X2
Swissprot	O81788	4e-54	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	A0A1S2XNI3	1e-151	A0A1S2XNI3_CICAR; WUSCHEL-related homeobox 13-like isoform X2
STRING	XP_004492094.1	1e-152	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	5e-52	WUSCHEL related homeobox 13

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]