PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004492097.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family WOX
Protein Properties Length: 258aa    MW: 29472.9 Da    PI: 5.0553
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004492097.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox672.5e-2187147257
                     T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     r+R+t+t+ ql++Le+ Fe  + +ps+e+++e+++ l    +++e++V++WFqNrRa+ k+
  XP_004492097.1  87 RQRWTPTPLQLQILERIFEAgTGTPSKEKIKEITADLskhgQISETNVYNWFQNRRARSKR 147
                     89*****************99**************************************97 PP
2Wus_type_Homeobox102.82.4e-3386149265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +r+RWtPtp Q++iLe+++++G+ tP+ke+i++ita L+++G+i+++NV++WFQNr+aR+++kq
     XP_004492097.1  86 SRQRWTPTPLQLQILERIFEAGTGTPSKEKIKEITADLSKHGQISETNVYNWFQNRRARSKRKQ 149
                        689***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-1781153IPR009057Homeodomain-like
PROSITE profilePS5007114.81983148IPR001356Homeobox domain
SuperFamilySSF466891.88E-1884151IPR009057Homeodomain-like
SMARTSM003891.6E-1485152IPR001356Homeobox domain
CDDcd000863.59E-1387149No hitNo description
PfamPF000463.9E-1987147IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MVNLMEWQKQ RWNHQNAANV EMMYVKVMTD EQLETLRKQI AVYATICEQL IEMHKTLSTH  60
QDLTGARLGG MYCDQLMGSG GHKISSRQRW TPTPLQLQIL ERIFEAGTGT PSKEKIKEIT  120
ADLSKHGQIS ETNVYNWFQN RRARSKRKQQ SAVPSSVNAE SEVENEVDSK DKKTILDEFF  180
APQPTENLSF QDPQVCSDLQ YFNPESDDSL RPARNFDHEP VFDGMLSNSR SSDYLTGKIE  240
ASESFNLYQS AGDYGMEG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140148RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004492097.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004492097.10.0WUSCHEL-related homeobox 13-like
SwissprotO817886e-81WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBLA0A1S2XPU90.0A0A1S2XPU9_CICAR; WUSCHEL-related homeobox 13-like
STRINGXP_004492096.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18553493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.11e-79WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]