PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004492188.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ERF
Protein Properties Length: 233aa    MW: 25715.2 Da    PI: 5.3728
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004492188.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.14e-1756106256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr +  +g++v+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g+
  XP_004492188.1  56 TYRGVRMRA-WGKYVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKGH 106
                     69****998.**********843...6***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.0E-3556119IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2156114IPR016177DNA-binding domain
PROSITE profilePS5103222.23456113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-3156114IPR001471AP2/ERF domain
PfamPF008478.3E-1256106IPR001471AP2/ERF domain
PRINTSPR003671.0E-95768IPR001471AP2/ERF domain
CDDcd000184.54E-3157115No hitNo description
PRINTSPR003671.0E-97995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MANDANENLS TTSSSLSSSS SSTSNSNSNS CTKNSPQNVM KSKKRERKQN DTKHPTYRGV  60
RMRAWGKYVS EIREPRKKSR IWLGTYPTAE MAARAHDVAA LAIKGHSAYL NFPNLAQNLP  120
RPSTTSPKDI QAAAAKAAAT IFVEIKDQQN QEDQDSSSTL SLENVRESSN SPSSTTTVTT  180
ATTDDDDDDT LFDLPDLLLD DKNGLFSYSS SSWQLCAVDS GLRLEEQLLW EFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-18521141073Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004492188.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1445911e-118AC144591.11 Medicago truncatula clone mth2-5f17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004492188.11e-171ethylene-responsive transcription factor ERF034
SwissprotQ8LBQ78e-66ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A1S2XQ151e-170A0A1S2XQ15_CICAR; ethylene-responsive transcription factor ERF034
STRINGXP_004492188.11e-171(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.15e-48ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]