PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004492364.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family WOX
Protein Properties Length: 215aa    MW: 24885 Da    PI: 9.2616
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004492364.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox642.1e-20766357
                    --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    +R+++t+eql +Leel+++  r+psa+++++++++l    +++ ++V++WFqN++a++++
  XP_004492364.1  7 SRWSPTTEQLMILEELYRSgIRTPSASQIQQITTHLsfygRIEGKNVFYWFQNHKARDRQ 66
                    7*****************99*************************************996 PP
2Wus_type_Homeobox118.72.6e-38567264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       a++RW+Pt+eQ++iLeely+sG+rtP++++iq+it++L+ yG+ie+kNVfyWFQN+kaR+rqk
     XP_004492364.1  5 ASSRWSPTTEQLMILEELYRSGIRTPSASQIQQITTHLSFYGRIEGKNVFYWFQNHKARDRQK 67
                       689***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.673267IPR001356Homeobox domain
SMARTSM003894.1E-4471IPR001356Homeobox domain
PfamPF000465.7E-18766IPR001356Homeobox domain
SuperFamilySSF466894.06E-11766IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-8766IPR009057Homeodomain-like
CDDcd000867.10E-4867No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MSPTASSRWS PTTEQLMILE ELYRSGIRTP SASQIQQITT HLSFYGRIEG KNVFYWFQNH  60
KARDRQKLRR KLNKQMQLQQ QQQQQQQLQV HHCQINHDNN VMINNNHFVG TFGYPFGSIT  120
QDISFFNSPS LLFEGVAANT SEGRVNCKRN CYNQQSLVEK NDNIALSNYG WKLVDVNHET  180
SSCCTRPLKT LDLFPLTTTR IKEDCTTSTK TQNSM
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004492364.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0169101e-166KM016910.1 Medicago truncatula LOOSE-FLOWER (LOOSE-FLOWER) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004492364.11e-162WUSCHEL-related homeobox 3
TrEMBLA0A1S2XR981e-160A0A1S2XR98_CICAR; WUSCHEL-related homeobox 3
STRINGXP_004492364.11e-161(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106322940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.11e-36WOX family protein