PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004492662.2
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family LBD
Protein Properties Length: 182aa    MW: 20303.2 Da    PI: 7.8833
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004492662.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260115.63e-36111131100
          DUF260   1 aCaaCkvlrrkCakd.Cvlapyfpa..eqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                     +C aCk+lrrkC+kd C++apyf +  e +++fa++hk+FGasn +kll ++p ++r da+ sl+yeA ar+ dPvyG+v++i++lqqq+ +l+a
  XP_004492662.2  11 PCGACKFLRRKCVKDsCIFAPYFESsvEGTAHFAAIHKVFGASNASKLLMQIPLHKRLDAVLSLCYEALARVTDPVYGCVAHIFALQQQVVKLQA 105
                     7***********9988*******7733558***************************************************************** PP

          DUF260  93 elallkee 100
                     ela+++++
  XP_004492662.2 106 ELAHAQAR 113
                     ***99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.12810114IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-3511111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MEFECGRSGG PCGACKFLRR KCVKDSCIFA PYFESSVEGT AHFAAIHKVF GASNASKLLM  60
QIPLHKRLDA VLSLCYEALA RVTDPVYGCV AHIFALQQQV VKLQAELAHA QARLSILKRI  120
SIDPQFQHPQ SSSLSPNQHS SLLDHRHHHV SSNNEINDYM SMHFDNHHPT PFDITNLLNP  180
SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-3581148111LOB family transfactor Ramosa2.1
5ly0_B7e-3581148111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004492662.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004492662.31e-134LOW QUALITY PROTEIN: LOB domain-containing protein 19
SwissprotO813228e-55LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A1S2XPU61e-132A0A1S2XPU6_CICAR; LOW QUALITY PROTEIN: LOB domain-containing protein 19
STRINGXP_004492662.11e-133(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.16e-57LOB domain-containing protein 31