PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004492678.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HD-ZIP
Protein Properties Length: 729aa    MW: 80846.5 Da    PI: 6.6684
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004492678.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.86.1e-2147102156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++eLe++F+++++p++++r eL+k+l L++rqVk+WFqNrR+++k
  XP_004492678.1  47 KKRYHRHTPQQIQELESMFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 102
                     688999***********************************************999 PP
2START203.11.2e-632414671206
                     HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS.....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela++a++el+k+a+ +ep+W   s     e++n +e+++++++ +     + +ea+r++gvv+ ++  lve+l+d++ +W+e+++    + +t+
  XP_004492678.1 241 ELALAATDELMKMAQNSEPLWINKSfeggrEILNHEEYTKIISTPNCkqngFVYEASRETGVVIINSLALVETLMDSN-RWSEMFPcviaRSSTT 334
                     57999*****************99999**************98766688899**************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--...-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe..sssvvRaellpSgiliepksnghskvtwve 168
                     evis+g      galqlm  elq+lsplvp R++ f+R+++q+ +g+w++vdvS+d  ++ ++  s+++  +++lpSg+++++++ng+skvtwve
  XP_004492678.1 335 EVISNGingtrnGALQLMHGELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSIDRMRETSSdaSPNFLNCRKLPSGCVVQDMPNGYSKVTWVE 429
                     ************************************************************9999******************************* PP

                     -EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     h+++++r++h+l+r l++sg+ +ga++wvatlqrqce+
  XP_004492678.1 430 HMEYDERQVHELYRGLLRSGMGFGAQRWVATLQRQCEC 467
                     ************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.55E-2131104IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-2237104IPR009057Homeodomain-like
PROSITE profilePS5007117.29744104IPR001356Homeobox domain
SMARTSM003899.5E-1845108IPR001356Homeobox domain
CDDcd000866.49E-1847104No hitNo description
PfamPF000461.8E-1847102IPR001356Homeobox domain
PROSITE patternPS00027079102IPR017970Homeobox, conserved site
PROSITE profilePS5084844.574232470IPR002913START domain
SuperFamilySSF559618.88E-34233467No hitNo description
CDDcd088752.79E-117236466No hitNo description
SMARTSM002345.1E-44241467IPR002913START domain
PfamPF018522.4E-55241467IPR002913START domain
SuperFamilySSF559612.16E-22489710No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MAENTHEANN SLRRNREEEH ESRSIGSDNI DGFSGDDFDA ADNPPRKKRY HRHTPQQIQE  60
LESMFKECPH PDEKQRLELS KRLCLETRQV KFWFQNRRTQ MKTQLERHEN SLLRQAIDKL  120
RAENMSIREA IRNPMCSNCG GASIIGEISL EEEHLRIENA RLKDELDRVC ALASKFMNRP  180
ITSLPNSSSV LGSNNGMNDF GILTSPLGIV SQNSTRTTTN MVTSSSSNGF DRSMERSMLL  240
ELALAATDEL MKMAQNSEPL WINKSFEGGR EILNHEEYTK IISTPNCKQN GFVYEASRET  300
GVVIINSLAL VETLMDSNRW SEMFPCVIAR SSTTEVISNG INGTRNGALQ LMHGELQVLS  360
PLVPVREVNF LRFCKQHAEG VWAVVDVSID RMRETSSDAS PNFLNCRKLP SGCVVQDMPN  420
GYSKVTWVEH MEYDERQVHE LYRGLLRSGM GFGAQRWVAT LQRQCECLAI LMSSTTLPST  480
QHSAISTGGK RSMLKLAQRM TNNFCAGVCA STVHQWNKLN VGNVGVDVRV MTRKSIDDPG  540
EPPGIVLSAG TSVWLPASPQ RVFDFLRDER LRSEWDILSN GGPMQEMAHI AKGHNHGNSV  600
SLLRASANNS SQSSMLILQE TCTDASGSLV VYAPVDIPAM HVVMNGGDSA YVALLPSGFA  660
VLPDGQCQES NNHGGASQQR ASGSLLTVAF QILVNSLPTA KLTVESVETV NNLISCTVHK  720
IKTALQCET
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004492678.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004492677.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A1S2XR600.0A0A1S2XR60_CICAR; homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
STRINGXP_004492677.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]