PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004492805.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family WRKY
Protein Properties Length: 214aa    MW: 24582.9 Da    PI: 8.3145
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004492805.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.71e-32135193159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK vk+++fprsYYrCt+++C+vkk+v+r ++d+++v++tYeg Hnh+
  XP_004492805.1 135 LDDGYRWRKYGQKAVKNTKFPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHP 193
                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-32122193IPR003657WRKY domain
SuperFamilySSF1182904.05E-28129194IPR003657WRKY domain
PROSITE profilePS5081128.334130195IPR003657WRKY domain
SMARTSM007743.6E-38135194IPR003657WRKY domain
PfamPF031063.9E-26136193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MMENQDLSPN PPPLLQNNNT SIPFFFTNPL ESQDDQGLAI GDIDIWGNFF LGQNNNLLVG  60
DGPKKTLMDV QCTSSNLVIN NNNEIISGSY KHEEEEEEKL MGNKEEKRVK GGRVMKKTTR  120
VPRFAFQTRS VDDILDDGYR WRKYGQKAVK NTKFPRSYYR CTHHTCNVKK QVQRLSKDTS  180
IVVTTYEGIH NHPCEKLMET LTPLLKQIQF LASL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-24125192774Probable WRKY transcription factor 4
2ayd_A3e-24123192271WRKY transcription factor 1
2lex_A3e-24125192774Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00539DAPTransfer from AT5G41570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004492805.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1477031e-126BT147703.1 Medicago truncatula clone JCVI-FLMt-5C22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004492805.11e-161probable WRKY transcription factor 12 isoform X1
TrEMBLA0A1S2XQ601e-159A0A1S2XQ60_CICAR; probable WRKY transcription factor 12 isoform X1
STRINGXP_004492805.11e-160(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32273471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41570.11e-56WRKY DNA-binding protein 24