PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004493005.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family CO-like
Protein Properties Length: 396aa    MW: 44714.9 Da    PI: 6.8259
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004493005.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box192.9e-06434535
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHk 35
                     C+ +++  + l+C+ ++  lC  C ++ H+
  XP_004493005.1  4 PCDYCDSRSAVLYCRPDSAKLCLVCDQHVHS 34
                    6**************************9995 PP
2zf-B_box18.25e-064588337
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg..........H 37
                     ++C+++++  ++  C++++   C+ C  e H g          H
  XP_004493005.1 45 YQICQNCKNDAASVRCFTDNLVRCPRCDWEAH-GdgdddsspplH 88
                    689******99*****************9999.435655555555 PP
3CCT66.57.6e-23345388144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R  a+lRYkeK+ktR+F+K+irYesRKa+A++R+Rv+GrFvk++
  XP_004493005.1 345 RGDAMLRYKEKKKTRRFDKHIRYESRKARADTRKRVRGRFVKAT 388
                     6789**************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.243147IPR000315B-box-type zinc finger
CDDcd000219.42E-8335No hitNo description
SMARTSM003361.1E-6447IPR000315B-box-type zinc finger
CDDcd000210.002734793No hitNo description
PfamPF062031.3E-16345387IPR010402CCT domain
PROSITE profilePS5101715.12345387IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MSFPCDYCDS RSAVLYCRPD SAKLCLVCDQ HVHSANALAF KHVRYQICQN CKNDAASVRC  60
FTDNLVRCPR CDWEAHGDGD DDSSPPLHNR RRLDGLSGCP SVHEIVSALG LDLKLNDAVY  120
VAEFEGPVVP VVQNRDEVYE QVVEVAKRKR DFEGSVCGGE VKNEFNFNDC SNEVDDSLLL  180
QQTPFTSMLN WPSEFEVEAK KNNNNDYGTE PGVLLWDRNP TYQPPQVWDF QLQKSRDMTY  240
DGAEEASLSV PKSMKHVLDM SSSTLGDYIL SRNNQSDQSS SSHVKEKVES NKKTKDGLSS  300
QSKLTKSITH GTNNIVPVME PLLSGSENDS NIKAKVILEE QARNRGDAML RYKEKKKTRR  360
FDKHIRYESR KARADTRKRV RGRFVKATDT SDIQAG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004493005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004493005.10.0zinc finger protein CONSTANS-LIKE 15-like isoform X1
TrEMBLA0A1S2XQM60.0A0A1S2XQM6_CICAR; zinc finger protein CONSTANS-LIKE 15-like isoform X1
STRINGXP_004493006.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47372843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.25e-41B-box type zinc finger protein with CCT domain