PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004493337.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ERF
Protein Properties Length: 280aa    MW: 31360 Da    PI: 5.0614
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004493337.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.5e-193483255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +y GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  XP_004493337.1 34 RYLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARAMRG 83
                    588******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.143491IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-293490IPR001471AP2/ERF domain
SMARTSM003801.2E-333497IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-213491IPR016177DNA-binding domain
CDDcd000183.43E-323490No hitNo description
PfamPF008473.3E-123583IPR001471AP2/ERF domain
PRINTSPR003671.1E-83546IPR001471AP2/ERF domain
PRINTSPR003671.1E-85773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MNPSKGKKKQ TTGTTSETTT QEQQQQQQTA WGGRYLGVRR RPWGRYAAEI RDPSTKERHW  60
LGTFDTAEEA ALAYDRAARA MRGSRARTNF VYADTPPGSS VTPILSPDQP QQTFHHHNVH  120
DLSFVLQPDP VPVNCNPVSV ITSSSYGYGY GEENNNYLNK YNNIPPQLPV ATLEASFKNN  180
NNGNSHFNQQ VFFNDDVSSS TATNNINNTN SIELPPLPPD INSSTCYDQG NAFNGGDDGY  240
YYWEQNNNLA PDCYNLHNNI QMLGTENVDV FDFGSSSFFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-213090162ATERF1
3gcc_A1e-213090162ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004493337.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004493337.10.0ethylene-responsive transcription factor LEP
TrEMBLA0A1S2XRD70.0A0A1S2XRD7_CICAR; ethylene-responsive transcription factor LEP
STRINGXP_004493337.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.14e-26ERF family protein