PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004493357.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 152aa    MW: 17296.4 Da    PI: 10.5179
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004493357.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000142547123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C  C ++F ++  L  H+r H
  XP_004493357.1 25 YSCVFCERTFDTRQALGGHQRGH 47
                    99*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.1E-42051IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.17E-62152No hitNo description
PROSITE profilePS5015711.5522552IPR007087Zinc finger, C2H2
PROSITE patternPS0002802747IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MLSTNGKGKM SEESETKVGN KKKRYSCVFC ERTFDTRQAL GGHQRGHKRE RNVIKLVKPR  60
RPRTNLTFTN IDLLFNSSNF NINNNNSSLN PNIINEIKEG HRPKSEFEFV LLPRGSQHVI  120
RTEIDFGLVS KGGANSHNYD LWSGSSSNSE EK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004493357.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_004493357.11e-108(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3073022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.14e-10zinc finger protein 3