PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004493384.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 240aa    MW: 27468.1 Da    PI: 8.3721
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004493384.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.3e-1367113354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+E+rRR+riNs ++ Lr+llP +      K +Ka+ L k+v+ +k+L
  XP_004493384.1  67 KNHKEAEKRRRERINSHLDHLRTLLPCN-----SKTDKASLLAKVVQRVKEL 113
                     58*************************8.....7************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.45964113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-1167113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.37E-1167116No hitNo description
SuperFamilySSF474597.85E-1468123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-1368122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-1270119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2604.4E-4153206No hitNo description
CDDcd048730.00447153215No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MLHQHIHHFE FDMENSQLFQ FLAANNPSFF DYSPSNTTMH QSFSTSLEVS EITDTPSQQQ  60
RALAAMKNHK EAEKRRRERI NSHLDHLRTL LPCNSKTDKA SLLAKVVQRV KELKQQTSEI  120
TKLETVPSET DEITVLSTGG DYTGDTRLIF KASLCCEDRS DLIPDLVDIL KSLHLKTLKA  180
EMATLGGRTR NVLVVAADHK EHSIESIHFL QNSLRSLVDR STSCNDRSKR RRGLDRRMMH
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004493384.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004493384.11e-178transcription factor bHLH106
SwissprotO806743e-74BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A1S2XSQ71e-176A0A1S2XSQ7_CICAR; transcription factor bHLH106
STRINGXP_004493384.11e-177(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66723249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.18e-77bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]