PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004493479.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HSF
Protein Properties Length: 239aa    MW: 27428.7 Da    PI: 8.1924
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004493479.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind101.85.9e-32231132102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+y ++ed++++++isw+++g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv +++         weF ++  kkg++ell++
  XP_004493479.1  23 FLLKTYMLVEDPATDDVISWNDEGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSR---------WEFCNDX-KKGERELLSE 107
                     9****************************************************************999.........****987.********** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  XP_004493479.1 108 IRRRKA 113
                     ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.0E-5019111IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.48E-2919111IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.0E-3320111IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.6E-2723111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-192346IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-196173IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406286IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-197486IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MEGVVISEKG LLECGRKCTP PPFLLKTYML VEDPATDDVI SWNDEGTAFV VWQPAEFARD  60
LLPTLFKHSN FSSFVRQLNT YGFRKVATSR WEFCNDXKKG ERELLSEIRR RKAWSNKQQH  120
TIQNQGTIQD SDEDQRSSST SSTSGYTNLV DENKRLKKEN GVLNSELTNM KRKCKELLDL  180
VAIYTQKKEE EEANKDYGDG RPMLFGVRLD VQQAGERRLK RNRAEISESA SILLSQSCK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-1921871884Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004493479.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004493479.11e-178LOW QUALITY PROTEIN: heat stress transcription factor B-3
SwissprotO222306e-69HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A1S2XRP21e-177A0A1S2XRP2_CICAR; LOW QUALITY PROTEIN: heat stress transcription factor B-3
STRINGXP_004493479.11e-177(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.15e-67heat shock transcription factor B3