PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004493567.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family SBP
Protein Properties Length: 350aa    MW: 38574.8 Da    PI: 8.4943
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004493567.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.66.4e-4257133177
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     +CqvegC++dl++ak y++rhkvC +hsk+p+v+v+ l+qrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+ 
  XP_004493567.1  57 RCQVEGCQVDLTDAKPYYSRHKVCAMHSKSPTVTVAALQQRFCQQCSRFHQLVEFDQGKRSCRRRLAGHNERRRKPP 133
                     6**************************************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.2E-3351119IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.57355132IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.96E-3956137IPR004333Transcription factor, SBP-box
PfamPF031104.0E-3158131IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGSSNSSSED SSLNGLKFGQ TIYFEDVAAI PPPPPSIATS SKKGGRCASL QQSQPPRCQV  60
EGCQVDLTDA KPYYSRHKVC AMHSKSPTVT VAALQQRFCQ QCSRFHQLVE FDQGKRSCRR  120
RLAGHNERRR KPPPSSLLTS RFARLSSSVF GNSGRGSSFL MEFNSHAKLS MRNPLPSPRS  180
SELFPGNQTT TLGWHWPGNS ESPSDNLFLQ GSVGGTSFPG TRHPPEESYT GVTDSSCARS  240
LLSNQTWGSR NTEPSLRLNN MLNFNETPMT QLATSSHSVA IHQLPNNSFC YKDIDPGNIS  300
HEVVPDLGLG HMSQPLDSQL SGELDLSQQG RRHYMDPEHS RAYESSQWSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-30581311184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004493567.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1578914e-89AC157891.3 Medicago truncatula chromosome 7 clone mte1-1i2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004493567.10.0squamosa promoter-binding-like protein 9
TrEMBLA0A1S2XRU30.0A0A1S2XRU3_CICAR; squamosa promoter-binding-like protein 9
STRINGXP_004493567.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42083359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.12e-67squamosa promoter binding protein-like 9