PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004493902.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 165aa    MW: 18649.8 Da    PI: 9.6543
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004493902.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.3e-0586108123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg++Fs    L  H+r+H
  XP_004493902.1  86 HECSICGMRFSLGQALGGHMRKH 108
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512577126No hitNo description
PfamPF139124.2E-83760IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.1183764IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.7E-43766IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.34E-937108No hitNo description
SMARTSM003551.33759IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803959IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.1E-484108IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.6E-986110IPR007087Zinc finger, C2H2
PROSITE profilePS501579.68186113IPR007087Zinc finger, C2H2
SMARTSM003550.03886108IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MAMKRQRNSQ GTENINISNC LMLLSCPQQK NYENGEYECK TCNKKFSCFQ ALGGHRASHK  60
RMKVIDGEEL KEEAKSLSLW NEPKMHECSI CGMRFSLGQA LGGHMRKHRA ATNEGLSSMK  120
QMIAKIPILK RSNSKRIMCL DLNLTPLEND LAFGMKSPPL PLSLF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004493902.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1253681e-123AC125368.7 Medicago truncatula clone mth2-13h15, complete sequence.
GenBankAC1357971e-123AC135797.13 Medicago truncatula clone mth2-11f7, complete sequence.
GenBankBT1473171e-123BT147317.1 Medicago truncatula clone JCVI-FLMt-2I11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004493902.11e-120zinc finger protein ZAT11-like
TrEMBLA0A1S2XSK11e-118A0A1S2XSK1_CICAR; zinc finger protein ZAT11-like
STRINGXP_004493902.11e-119(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.18e-42C2H2 family protein