PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004494064.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 251aa    MW: 28379 Da    PI: 6.5054
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004494064.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.2e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+++Ed +l+d+++++G+g +W t ++++g+ R++k+c++rw++yl
   XP_004494064.1 14 KGPWSPQEDAKLKDYIEKHGTGgNWITLPKKVGLIRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding35.91.8e-1169111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g+++  Ed+++  +++  G++ W+ Ia+++  gRt++++k++w++
   XP_004494064.1  69 GKFSDLEDQIICTLFASIGSR-WSIIASHLE-GRTDNDVKNYWNT 111
                      8999*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.215962IPR017930Myb domain
SuperFamilySSF466893.47E-2611109IPR009057Homeodomain-like
SMARTSM007172.4E-111364IPR001005SANT/Myb domain
PfamPF002497.8E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-231569IPR009057Homeodomain-like
CDDcd001678.49E-91662No hitNo description
PROSITE profilePS5129420.68863117IPR017930Myb domain
SMARTSM007176.3E-1167115IPR001005SANT/Myb domain
PfamPF002493.3E-1069111IPR001005SANT/Myb domain
CDDcd001671.75E-670113No hitNo description
Gene3DG3DSA:1.10.10.601.0E-2170117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPQ EDAKLKDYIE KHGTGGNWIT LPKKVGLIRC GKSCRLRWLN  60
YLRPNIKHGK FSDLEDQIIC TLFASIGSRW SIIASHLEGR TDNDVKNYWN TKLKKKIMAN  120
INHSIEMKAQ QITLLPYQSQ ESFTGSYSYS STSSLLSGNS STSAAQESFN IGPTEKCQLF  180
KDINVIDQEL VAKCGDINYL YNDVEDSEKL MFSNDENGLW GENTLDYGLD EINKEIISTD  240
ISSCKKYLFD D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-22141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004494064.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004494064.10.0transcription factor RAX2-like
SwissprotQ9SJL72e-72RAX2_ARATH; Transcription factor RAX2
TrEMBLA0A1S2XU870.0A0A1S2XU87_CICAR; transcription factor RAX2-like
STRINGXP_004494064.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.19e-74MYB family protein
Publications ? help Back to Top
  1. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]