PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004494126.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

HD-ZIP

Protein Properties

Length: 233aa MW: 27242.5 Da PI: 5.4851

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004494126.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58	1.6e-18	62	117	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r k+ ++t++q+e Le+ F+++ +++ e++ +L+++lgL+ rq+ vWFqNrR+++k XP_004494126.1 62 REKKKRLTNNQIELLERSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWK 117 567888*************************************************9 PP
2	HD-ZIP_I/II	115.1	4.3e-37	63	155	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekk+rl+++q++lLE+sF+ee kL+perK++l+reLglqprq+avWFqnrR R+k+kqlE+ y+ Lk+++d +++e++ L++ev +L+ +lke XP_004494126.1 63 EKKKRLTNNQIELLERSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWKAKQLEHLYDELKHEFDVISKEKQILQEEVLKLKGKLKE 155 69**************************************************************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.2E-19	44	121	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.139	59	119	IPR001356	Homeobox domain
SMART	SM00389	9.8E-17	61	123	IPR001356	Homeobox domain
CDD	cd00086	2.34E-15	62	120	No hit	No description
Pfam	PF00046	6.7E-16	62	117	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.2E-19	65	126	IPR009057	Homeodomain-like
PRINTS	PR00031	7.9E-5	90	99	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	94	117	IPR017970	Homeobox, conserved site
PRINTS	PR00031	7.9E-5	99	115	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MDWNESSRPF IPLPESSLSF FYNYNNNPSY SGMEVSQASL GDQTQQMFPA MDEMNINGNN 60 NREKKKRLTN NQIELLERSF QEEIKLDPER KMKLSRELGL QPRQIAVWFQ NRRTRWKAKQ 120 LEHLYDELKH EFDVISKEKQ ILQEEVLKLK GKLKEQCNFR TQTQTFGGYK EMSNEETVES 180 TSEGMKCSNR PQGITSSNIQ QVAAAEGYNS SFTVEDFNSV SMPPQWPVLP YYP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	111	119	RRTRWKAKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004494126.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU938527	5e-38	EU938527.1 Lens culinaris tendril-less gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004494126.1	1e-174	putative homeobox-leucine zipper protein ATHB-51
Swissprot	Q9LZR0	4e-46	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	A0A1S2XV30	1e-173	A0A1S2XV30_CICAR; putative homeobox-leucine zipper protein ATHB-51
STRING	XP_004494126.1	1e-173	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3394	34	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	4e-41	homeobox 51

Publications ? help Back to Top
Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]