PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004494150.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

GRF

Protein Properties

Length: 390aa MW: 43364 Da PI: 7.7761

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004494150.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	82.1	4.7e-26	145	188	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e XP_004494150.1 145 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVE 188 79***************************************987 PP
2	QLQ	51.5	3e-18	75	111	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+F+ +Q+q+L+ Q+l+++y++a++ vP eLlq+i+k XP_004494150.1 75 SHFSLSQWQELELQALIFRYMLAGASVPTELLQPIKK 111 79*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	6.5E-11	75	111	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	20.412	76	111	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	3.5E-13	76	109	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.808	145	189	IPR014977	WRC domain
Pfam	PF08879	2.3E-22	146	188	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MDFDLKQWRN QHESEEQQHH STKMPKLLLH SETHQQQSSV TPALPFFLES NNTKVSNLSD 60 STLPSNTNRF PRMGSHFSLS QWQELELQAL IFRYMLAGAS VPTELLQPIK KSLIHSPLHF 120 LHHPLQHFQP TPLLQTGYWG RGAMDPEPGR CRRTDGKKWR CSRDVVAGQK YCERHMHRGR 180 NRSRKPVELP TPTSSAIGGG GGGSFSASSS ISSQPLTTSF MKSPFHHLLH LNERPSGTKN 240 EDKRILFESE DHVGGDGRSG TQMLRHFFDD WPRSLQESDN AENNVGSSTC LSISMPGNNN 300 TSSSDVSLKL STGYGEEPCP RNENVGLEND NQQLQLNWAG GWNSTNNQVA SMGGPLAEAF 360 RSSTSTSSSP TSVLHQLPRS SGSETSYIST

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MDFDLKQWRN QHESEEQQHH STKMPKLLLH SETHQQQSSV TPALPFFLES NNTKVSNLSD  60
STLPSNTNRF PRMGSHFSLS QWQELELQAL IFRYMLAGAS VPTELLQPIK KSLIHSPLHF  120
LHHPLQHFQP TPLLQTGYWG RGAMDPEPGR CRRTDGKKWR CSRDVVAGQK YCERHMHRGR  180
NRSRKPVELP TPTSSAIGGG GGGSFSASSS ISSQPLTTSF MKSPFHHLLH LNERPSGTKN  240
EDKRILFESE DHVGGDGRSG TQMLRHFFDD WPRSLQESDN AENNVGSSTC LSISMPGNNN  300
TSSSDVSLKL STGYGEEPCP RNENVGLEND NQQLQLNWAG GWNSTNNQVA SMGGPLAEAF  360
RSSTSTSSSP TSVLHQLPRS SGSETSYIST

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004494150.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004494150.1	0.0	growth-regulating factor 4
Swissprot	Q8L8A7	8e-92	GRF4_ARATH; Growth-regulating factor 4
TrEMBL	A0A1S2XV50	0.0	A0A1S2XV50_CICAR; growth-regulating factor 4
STRING	XP_004494150.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7895	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52910.1	1e-78	growth-regulating factor 4

Publications ? help Back to Top
Kuijt SJ, et al. Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors. Plant Physiol., 2014. 164(4): p. 1952-66 [PMID:24532604] Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]