PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004494211.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family NAC
Protein Properties Length: 250aa    MW: 29105.7 Da    PI: 7.2513
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004494211.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM139.12.8e-4341351127
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                     + pG+rF Pt+eel+++yL++ +eg++  ++ +vi+ v+iy+++P++Lp+    +   + ++w+fF+kr++++ +g r++r+t++gyWkatg+ +
  XP_004494211.1   4 MLPGYRFYPTEEELISFYLHNMLEGDNeYKIRTVIPVVNIYDYNPSELPQisgeASMRDMEQWFFFIKRQESEVRGGRPKRVTTTGYWKATGSPN 98 
                     579*********************9987888889***************6455422235669********************************* PP

             NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                     +v+s++++ +g+k+t+vfy+grap+g+ktdW m+ey+
  XP_004494211.1  99 HVYSSHNHIIGMKRTMVFYSGRAPNGKKTDWKMNEYK 135
                     ************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-443163IPR003441NAC domain
PROSITE profilePS5100545.7394163IPR003441NAC domain
PfamPF023658.6E-226135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MENMLPGYRF YPTEEELISF YLHNMLEGDN EYKIRTVIPV VNIYDYNPSE LPQISGEASM  60
RDMEQWFFFI KRQESEVRGG RPKRVTTTGY WKATGSPNHV YSSHNHIIGM KRTMVFYSGR  120
APNGKKTDWK MNEYKAIQDQ PSSSNKLAPM LRNEMSLCRV YKKSKCLRAF DRRPAPRRVT  180
NDQEFNKDST ICNHNNVQIF ATSSPDSSSS LDHGQTSNEV GEGSQMDINV DHREPLLYWE  240
HVDWFLGIEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-30316316165NO APICAL MERISTEM PROTEIN
1ut4_B8e-30316316165NO APICAL MERISTEM PROTEIN
1ut7_A8e-30316316165NO APICAL MERISTEM PROTEIN
1ut7_B8e-30316316165NO APICAL MERISTEM PROTEIN
3swm_A9e-30316319168NAC domain-containing protein 19
3swm_B9e-30316319168NAC domain-containing protein 19
3swm_C9e-30316319168NAC domain-containing protein 19
3swm_D9e-30316319168NAC domain-containing protein 19
3swp_A9e-30316319168NAC domain-containing protein 19
3swp_B9e-30316319168NAC domain-containing protein 19
3swp_C9e-30316319168NAC domain-containing protein 19
3swp_D9e-30316319168NAC domain-containing protein 19
4dul_A8e-30316316165NAC domain-containing protein 19
4dul_B8e-30316316165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004494211.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004494211.10.0NAC domain-containing protein 90
TrEMBLA0A1S2XTA10.0A0A1S2XTA1_CICAR; NAC domain-containing protein 90
STRINGXP_004494211.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87134123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.13e-69NAC domain containing protein 90