PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004494428.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family WRKY
Protein Properties Length: 248aa    MW: 28508.8 Da    PI: 6.1124
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004494428.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.91.2e-2956113359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     D  +WrKYGqK++kgs++pr+YYrC+ + gC++kk+vers++d ++++itY+++Hnh+
  XP_004494428.1  56 DFGSWRKYGQKPIKGSPYPRGYYRCSASkGCSAKKQVERSSTDSSMLIITYTSTHNHP 113
                     5668**********************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.4E-3045115IPR003657WRKY domain
PROSITE profilePS5081130.21749115IPR003657WRKY domain
SuperFamilySSF1182904.05E-2551115IPR003657WRKY domain
SMARTSM007741.9E-3354114IPR003657WRKY domain
PfamPF031064.0E-2558113IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MDNINDSPQH ESEPSNLELK PESQASKKRK MVEKRVVRVR VGENVSKLKN EGLPTDFGSW  60
RKYGQKPIKG SPYPRGYYRC SASKGCSAKK QVERSSTDSS MLIITYTSTH NHPDPTTLLQ  120
QPKQSKTKTI EEQEHIEEEM INSNNNKNKN KSTITNDQMT NEENYHYLQS PIDQEDPFKL  180
HTEINHADKI DILLEEEPLC YAKLKNLSAS KSEELDFFDE LEELPMSSSF LHFTRSIFSD  240
ERIPVAPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-22561161880Disease resistance protein RRS1
5w3x_D3e-22561161880Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004494428.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1404311e-100BT140431.1 Medicago truncatula clone JCVI-FLMt-17K15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004494428.10.0probable WRKY transcription factor 69
TrEMBLA0A1S2XTS30.0A0A1S2XTS3_CICAR; probable WRKY transcription factor 69
STRINGXP_004494428.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97083241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.12e-33WRKY DNA-binding protein 35