PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004494549.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GATA
Protein Properties Length: 133aa    MW: 14906.7 Da    PI: 9.122
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004494549.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.22.7e-192457134
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                    Cs C+ttkTplWR gp+g+ktLCnaCG++yrk++
  XP_004494549.1 24 CSDCKTTKTPLWRGGPNGPKTLCNACGIRYRKRR 57
                    ********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.4E-151870IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.8E-142172IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.52E-122162No hitNo description
PROSITE patternPS0034402449IPR000679Zinc finger, GATA-type
PfamPF003205.2E-172457IPR000679Zinc finger, GATA-type
CDDcd002022.20E-132473No hitNo description
PROSITE profilePS5011412.7162454IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MGIMDQMDKE CCSYKEMSVI KKCCSDCKTT KTPLWRGGPN GPKTLCNACG IRYRKRRGCC  60
NKKGQEKERK RERAENGVGG NDDLRVCLKM KLVALGEEVL LNSVMKKQRM IKLGEEEQAA  120
VCLMAISCGF VFA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004494549.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004494549.13e-92GATA transcription factor 16-like isoform X1
SwissprotQ9FJ105e-30GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A1S2XU926e-91A0A1S2XU92_CICAR; GATA transcription factor 16-like isoform X1
STRINGXP_004494549.11e-91(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.16e-23GATA transcription factor 15
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]