PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004494837.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

Dof

Protein Properties

Length: 211aa MW: 23636.2 Da PI: 8.1073

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004494837.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.8	9.8e-38	20	77	3	60
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 e++l+cprC+s+ntkfCyynnysl+qPry+Ck+C+ryWt+GG+lrn+PvGg++rkn+k XP_004494837.1 20 EEQLNCPRCKSSNTKFCYYNNYSLTQPRYLCKTCKRYWTQGGSLRNIPVGGSSRKNNK 77 7899****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-24	18	77	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.8E-33	21	77	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.82	23	77	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	25	61	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MEGINDLNSC RMSEKKTRVE EQLNCPRCKS SNTKFCYYNN YSLTQPRYLC KTCKRYWTQG 60 GSLRNIPVGG SSRKNNKLIS SSSQNNIIKG HDLNLAFPSM DKYPASMFSS TSGLINNSAT 120 NYVPNNSLMM MSSSDASGQE IKPTNLGFSL ENRYSNSYEV QVQENVGTLL FPFGDMNQIS 180 TTHHVEVEHD KEQGNSTGYN WNGVIGEGSS W

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004494837.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004494837.1	1e-156	dof zinc finger protein DOF4.1-like
TrEMBL	A0A1S2XUS6	1e-155	A0A1S2XUS6_CICAR; dof zinc finger protein DOF4.1-like
STRING	XP_004494837.1	1e-156	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00940.1	4e-42	Dof family protein