PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004495105.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

ERF

Protein Properties

Length: 139aa MW: 15655.1 Da PI: 5.1787

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004495105.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61.9	1.4e-19	13	64	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+G+r+++ +g+++AeIrdp+ +r++lg+f+taeeAa+a++ a+ ++g+ XP_004495105.1 13 RYRGIRRRP-WGKFAAEIRDPTRK--GTRIWLGTFDTAEEAARAYDVAAFHFRGH 64 69*****.******8542..4*********************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	7.3E-33	13	73	IPR001471	AP2/ERF domain
CDD	cd00018	3.37E-32	13	72	No hit	No description
SMART	SM00380	6.3E-38	13	77	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.53E-24	13	72	IPR016177	DNA-binding domain
PROSITE profile	PS51032	25.699	13	71	IPR001471	AP2/ERF domain
Pfam	PF00847	8.3E-14	13	64	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.4E-12	14	25	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.4E-12	37	53	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
MEGNSNGNVE QVRYRGIRRR PWGKFAAEIR DPTRKGTRIW LGTFDTAEEA ARAYDVAAFH 60 FRGHRAILNF PNEYQASNSN SNSLPMPITL PPSPSPPSTN PNPNSTSSNS YFVDDNFDFE 120 FLDDKLLQEL LQDGSTNSQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-30	2	74	3	75	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004495105.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT051449	3e-78	BT051449.1 Medicago truncatula clone MTYF1_F2_F3_F41G-L-18 unknown mRNA.
GenBank	BT145398	3e-78	BT145398.1 Medicago truncatula clone JCVI-FLMt-16L17 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004495105.1	2e-99	ethylene-responsive transcription factor ERF098-like
Swissprot	Q9LTC5	9e-38	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	A0A1S2XWN6	4e-98	A0A1S2XWN6_CICAR; ethylene-responsive transcription factor ERF098-like
STRING	XP_004495105.1	7e-99	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF270	33	215

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23230.1	1e-26	ERF family protein

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]