PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004495117.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 194aa    MW: 22160 Da    PI: 6.1117
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004495117.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000213961123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C  C++ F++   L  H++ H
  XP_004495117.1 39 YECVFCKRGFTTAQALGGHMNIH 61
                    99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.3E-43765IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.59E-63765No hitNo description
PROSITE profilePS5015710.993966IPR007087Zinc finger, C2H2
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MEFSYLQEDS SKSSSDENID RSSERNHEDD HDIGTGRSYE CVFCKRGFTT AQALGGHMNI  60
HRKDRANNNK SNTTKPNFTP HPPSSSSKLV DDHSYANLGF YSSIPRGAYY NSISSTTSPQ  120
YHHGEVDSLN YHQLYFPSHV QYSEVLCVEN QRVFGQDWSK KGLSLYTNPL NKDKIENNNE  180
VDDLDLELRL GHYP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004495117.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1414181e-68BT141418.1 Medicago truncatula clone JCVI-FLMt-1D20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004495117.11e-144transcriptional regulator SUPERMAN-like
TrEMBLA0A1S2XVH71e-143A0A1S2XVH7_CICAR; transcriptional regulator SUPERMAN-like
STRINGXP_004495117.11e-143(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16863073
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.17e-15C2H2 family protein