PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004495255.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 258aa    MW: 30131 Da    PI: 7.4563
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004495255.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding612.5e-192269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd+ll+++vk++G g+W+++a+  g++R +k+c++rw +yl
   XP_004495255.1 22 KGPWTSEEDKLLIEYVKLHGEGRWNSVASLAGLRRNGKSCRLRWVNYL 69
                     79********************************************97 PP
2Myb_DNA-binding52.61e-1675119147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g  T++E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
   XP_004495255.1  75 KGQITPQEESIILELHARWGNR-WSTIARNLP-GRTDNEIKNYWRTH 119
                      5778******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.6531769IPR017930Myb domain
SuperFamilySSF466891.8E-3020116IPR009057Homeodomain-like
SMARTSM007172.2E-162171IPR001005SANT/Myb domain
PfamPF002494.7E-182269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-242376IPR009057Homeodomain-like
CDDcd001671.62E-112469No hitNo description
PROSITE profilePS5129425.44570124IPR017930Myb domain
SMARTSM007172.4E-1574122IPR001005SANT/Myb domain
PfamPF002491.4E-1475119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2477123IPR009057Homeodomain-like
CDDcd001672.06E-1079120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MYSGVIEGNT RWCVIEEDGW RKGPWTSEED KLLIEYVKLH GEGRWNSVAS LAGLRRNGKS  60
CRLRWVNYLR PDLKKGQITP QEESIILELH ARWGNRWSTI ARNLPGRTDN EIKNYWRTHF  120
KKKAKKTADA ADKTKKVSLR KQNQQQIKQQ QQIQQQQQIQ YNFDMKGILE LLEENEYSVP  180
STSQETQEMV TMCPETTEQH GYFYSMLNGN CNVYADESSN EEILWDGLWN LDDVLGNSMQ  240
LMLQAKPTNV HNLVTPFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-272212427128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004495255.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004495255.10.0transcription factor WER-like
TrEMBLA0A1S2XVQ40.0A0A1S2XVQ4_CICAR; transcription factor WER-like
STRINGXP_004495255.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.18e-72myb domain protein 305