PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004495457.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 193aa    MW: 22241.1 Da    PI: 6.0099
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004495457.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000162345123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C++ F++   L  H++ H
  XP_004495457.1 23 YECTFCKRGFTNAQALGGHMNIH 45
                    99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.83E-72049No hitNo description
Gene3DG3DSA:3.30.160.602.1E-42149IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00972345IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.4682350IPR007087Zinc finger, C2H2
PROSITE patternPS0002802545IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MNSDISIEEN DDQDENSGTK RCYECTFCKR GFTNAQALGG HMNIHRKDRA KAKQPTNSSS  60
SRQYTNYKFY TTNDEVVSFP FSSEQTIKQN FDHHMYFQHQ YLPPPNNLVT NQLPSNVNAF  120
PYDQYYPKSS SSSNWPNLHL NHQELQGANL SLQIGPTHDH VDNNNNNNNQ IIWSGNQKQN  180
DEVDLELRLG LDP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004495457.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004495457.11e-143transcriptional regulator TAC1
RefseqXP_027189927.11e-143transcriptional regulator TAC1
TrEMBLA0A1S2XW371e-142A0A1S2XW37_CICAR; transcriptional regulator TAC1
STRINGXP_004495457.11e-143(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16863073
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.19e-17C2H2 family protein