PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004495979.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

NF-YB

Protein Properties

Length: 142aa MW: 16490.5 Da PI: 5.1409

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004495979.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	166.3	4e-52	37	131	2	96
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 reqdr+lPianv+rimk++lP nakisk+aket+qecvsef+sfvt+easdkc++ekrkt+ngdd++ a++tlGf+dy+eplk yl+k+rel+ + XP_004495979.1 37 REQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFVSFVTGEASDKCHKEKRKTVNGDDVCSAFSTLGFDDYAEPLKRYLNKFRELDVQ 131 89*****************************************************************************************9866 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.3E-51	31	137	IPR009072	Histone-fold
SuperFamily	SSF47113	1.93E-38	39	138	IPR009072	Histone-fold
Pfam	PF00808	1.6E-26	42	105	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	7.5E-19	70	88	No hit	No description
PRINTS	PR00615	7.5E-19	89	107	No hit	No description
PRINTS	PR00615	7.5E-19	108	126	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MSEKKKGKLP DRESFYKYNN NFMREEEEED DDENIIREQD RLLPIANVGR IMKQILPPNA 60 KISKEAKETM QECVSEFVSF VTGEASDKCH KEKRKTVNGD DVCSAFSTLG FDDYAEPLKR 120 YLNKFRELDV QRSNQNKGGN IN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	8e-44	36	127	1	92	Transcription factor HapC (Eurofung)
4g92_B	8e-44	36	127	1	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004495979.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004495979.1	1e-101	nuclear transcription factor Y subunit B-5
Swissprot	O82248	8e-56	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	A0A1S2XXA9	1e-100	A0A1S2XXA9_CICAR; nuclear transcription factor Y subunit B-5
STRING	XP_004495979.1	1e-101	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF805	32	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	5e-57	nuclear factor Y, subunit B5

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]