PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004496024.2

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

NF-YB

Protein Properties

Length: 154aa MW: 17243.3 Da PI: 6.7553

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004496024.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	129	1.7e-40	6	88	4	86
NF-YB 4 qdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 ++ lPianv+rimk+ lP nakisk++ke++qe v+efisfvt+eas+kcq+e+rk++ngdd++wal++lGf++y+e++ ++ XP_004496024.2 6 GEKTLPIANVGRIMKQNLPPNAKISKESKELMQESVTEFISFVTGEASEKCQKENRKSVNGDDICWALCSLGFDNYAEAIGKF 88 5789**************************************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.8E-38	5	87	IPR009072	Histone-fold
SuperFamily	SSF47113	1.71E-30	8	89	IPR009072	Histone-fold
Pfam	PF00808	1.5E-24	9	73	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.9E-12	37	55	No hit	No description
PRINTS	PR00615	1.9E-12	56	74	No hit	No description
PRINTS	PR00615	1.9E-12	75	93	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MKSGDGEKTL PIANVGRIMK QNLPPNAKIS KESKELMQES VTEFISFVTG EASEKCQKEN 60 RKSVNGDDIC WALCSLGFDN YAEAIGKFGS EQAFNHYKNR YIVRDYYSLN EINFAKFNKV 120 ITLNSLSQNI AHSTNSICHV SSNLNSNDLD CSFP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	7e-35	1	90	1	88	Transcription factor HapC (Eurofung)
4g92_B	7e-35	1	90	1	88	Transcription factor HapC (Eurofung)
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004496024.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC151426	2e-76	AC151426.32 Medicago truncatula clone mth2-6o22, complete sequence.
GenBank	AC161241	2e-76	AC161241.18 Medicago truncatula clone mth2-193c3, complete sequence.
GenBank	JQ918284	2e-76	JQ918284.1 Medicago truncatula nuclear transcription factor Y subunit B11 (NF-YB11) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004496024.2	1e-112	nuclear transcription factor Y subunit B-4
Swissprot	O04027	2e-38	NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBL	A0A1S2XXF4	1e-110	A0A1S2XXF4_CICAR; nuclear transcription factor Y subunit B-4
STRING	XP_004496024.1	1e-58	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF805	32	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09030.1	8e-41	nuclear factor Y, subunit B4

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]