PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004496025.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ERF
Protein Properties Length: 226aa    MW: 25774.7 Da    PI: 5.1569
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004496025.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.19.2e-1864114255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr +  +++Wv+e r+p++n  + r++lg++ t+e+Aa+a++ a++ l+g
  XP_004496025.1  64 IYRGVRARD-NNKWVCEMRVPNNN--KSRIWLGTYPTPEMAARAHDVAALTLRG 114
                     69****999.8*********9766..5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.31E-2663124No hitNo description
PfamPF008479.5E-1363114IPR001471AP2/ERF domain
SMARTSM003806.5E-2764128IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-2964124IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2164124IPR016177DNA-binding domain
PROSITE profilePS5103221.28564122IPR001471AP2/ERF domain
PRINTSPR003677.9E-76576IPR001471AP2/ERF domain
PRINTSPR003677.9E-788104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0016049Biological Processcell growth
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MDDIFMSSLN YATQQHLNIS SSSSSSETSY STNRTSSNEE VILASTRPKK RAGRRVFKET  60
RHPIYRGVRA RDNNKWVCEM RVPNNNKSRI WLGTYPTPEM AARAHDVAAL TLRGKSACLN  120
FADSAWRLRL PETTDAVEIR RAAMEAAQLF VVEDKQCEQQ SVGEEQVVPV VTSEYDEEMN  180
DLILSIANEP LRSPPPSMTD YYGGNWRDDY NIDMYDTQVS LWNFST
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00104PBMTransfer from AT1G63030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004496025.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1465732e-68AC146573.21 Medicago truncatula clone mth2-145j1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496025.11e-170dehydration-responsive element-binding protein 1E-like
SwissprotQ9SGJ63e-57DRE1E_ARATH; Dehydration-responsive element-binding protein 1E
TrEMBLA0A1S2XYS11e-168A0A1S2XYS1_CICAR; dehydration-responsive element-binding protein 1E-like
STRINGXP_004496025.11e-169(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63030.21e-57ERF family protein